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Started by upstream project "BIOFORMATS-test-repo" build number 362 originally caused by: Started by upstream project "Trigger" build number 388 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins15541763867597932229.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_57791_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 04:32:56,034 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 04:32:56,035 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 04:32:56,035 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:32:56,036 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:32:56,036 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:32:56,037 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:32:56,037 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:32:56,037 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:32:56,037 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:32:56,038 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:32:56,038 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:32:56,038 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:32:56,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:32:56,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:32:56,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:32:56,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:32:56,221 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:32:56,221 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:32:56,221 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:32:56,222 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:32:56,222 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 04:32:56,223 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 04:32:56,223 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-02 04:32:56,232] [main] java.version = 17.0.2 [testng] 04:32:56,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:32:56,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:32:56,274 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-02_04-32-56.log] [testng] 04:32:56,276 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-02 04:32:56,278] [main] testng.directory = /data [testng] [2025-03-02 04:32:56,278] [main] testng.configDirectory = /config [testng] [2025-03-02 04:32:56,286] [main] testng.multiplier = 1.0 [testng] [2025-03-02 04:32:56,287] [main] testng.in-memory = false [testng] [2025-03-02 04:32:56,287] [main] testng.allow-missing = false [testng] [2025-03-02 04:32:56,287] [main] user.language = en [testng] [2025-03-02 04:32:56,287] [main] user.country = ${user.country} [testng] [2025-03-02 04:32:56,287] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-02 04:33:00,693] [main] ---------------------------------------- [testng] [2025-03-02 04:33:00,693] [main] Total files: 22 [testng] [2025-03-02 04:33:00,693] [main] Scan time: 4.406 s (200 ms/file) [testng] [2025-03-02 04:33:00,693] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-02 04:33:24,279] [pool-1-thread-1] Initializing /data/converted/mitosis-test.seq: [testng] 04:33:24,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:33:24,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:33:24,280 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-02_04-33-24.log] [testng] 04:33:24,281 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c833a42 - End of configuration. [testng] [2025-03-02 04:33:24,782] [pool-1-thread-12] Initializing /data/alex/AFAset0003.ips: [testng] 04:33:24,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:33:24,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:33:24,783 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-02_04-33-24.log] [testng] 04:33:24,783 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ca08a4d - End of configuration. [testng] [2025-03-02 04:33:25,249] [pool-1-thread-11] Initializing /data/samples/TISSUE.TIF: [testng] 04:33:25,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:33:25,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:33:25,250 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-02_04-33-25.log] [testng] 04:33:25,250 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cd2e469 - End of configuration. [testng] [2025-03-02 04:33:26,416] [pool-1-thread-10] Initializing /data/converted/clown8c.tif: [testng] 04:33:26,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:33:26,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:33:26,417 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-02_04-33-26.log] [testng] 04:33:26,417 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e5e8341 - End of configuration. [testng] [2025-03-02 04:33:27,482] [pool-1-thread-9] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] 04:33:27,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:33:27,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:33:27,483 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-02_04-33-27.log] [testng] 04:33:27,484 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40f4d25 - End of configuration. [testng] [2025-03-02 04:33:28,600] [pool-1-thread-8] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 04:33:28,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:33:28,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:33:28,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-02_04-33-28.log] [testng] 04:33:28,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67b2b86 - End of configuration. [testng] [2025-03-02 04:33:29,054] [pool-1-thread-7] Initializing /data/converted/clown8c.ipw: [testng] 04:33:29,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:33:29,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:33:29,055 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-02_04-33-29.log] [testng] 04:33:29,055 |-INFO in ch.qos.logback.core.sift.SiftProcessor@780420ad - End of configuration. [testng] [2025-03-02 04:33:29,472] [pool-1-thread-6] Initializing /data/xiuwen/head2.seq: [testng] 04:33:29,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:33:29,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:33:29,473 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-02_04-33-29.log] [testng] 04:33:29,473 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58ca5b26 - End of configuration. [testng] [2025-03-02 04:33:30,034] [pool-1-thread-5] Initializing /data/converted/dub01.seq: [testng] 04:33:30,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:33:30,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:33:30,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-02_04-33-30.log] [testng] 04:33:30,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f6e09c9 - End of configuration. [testng] [2025-03-02 04:33:30,557] [pool-1-thread-4] Initializing /data/converted/clown.seq: [testng] 04:33:30,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:33:30,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:33:30,558 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-02_04-33-30.log] [testng] 04:33:30,558 |-INFO in ch.qos.logback.core.sift.SiftProcessor@145cdf9b - End of configuration. [testng] [2025-03-02 04:33:31,059] [pool-1-thread-3] Initializing /data/converted/clown.ipw: [testng] 04:33:31,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:33:31,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:33:31,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-02_04-33-31.log] [testng] 04:33:31,061 |-INFO in ch.qos.logback.core.sift.SiftProcessor@854b0d3 - End of configuration. [testng] [2025-03-02 04:33:31,501] [pool-1-thread-2] Initializing /data/converted/clown8c.seq: [testng] 04:33:31,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:33:31,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:33:31,502 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-02_04-33-31.log] [testng] 04:33:31,502 |-INFO in ch.qos.logback.core.sift.SiftProcessor@567fb3f1 - End of configuration. [testng] [2025-03-02 04:33:37,689] [pool-1-thread-8] Initializing /data/samples/PROBE.TIF: [testng] [2025-03-02 04:33:38,210] [pool-1-thread-2] Initializing /data/converted/mitosis-test.tif: [testng] [2025-03-02 04:33:39,499] [pool-1-thread-5] Initializing /data/samples/HEART.SEQ: [testng] [2025-03-02 04:33:39,965] [pool-1-thread-4] Initializing /data/converted/dub01.ipw: [testng] [2025-03-02 04:33:40,434] [pool-1-thread-7] Initializing /data/converted/clown.tif: [testng] [2025-03-02 04:33:40,948] [pool-1-thread-3] Initializing /data/converted/mitosis-test.ipw: [testng] [2025-03-02 04:33:41,406] [pool-1-thread-1] Initializing /data/converted/dub01.pic: [testng] [2025-03-02 04:33:43,240] [pool-1-thread-10] Initializing /data/converted/NESb_C2_TP7.seq: [testng] [2025-03-02 04:33:43,732] [pool-1-thread-11] Initializing /data/samples/FLDUAL.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 3 minutes 20 seconds Finished: SUCCESS