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Started by upstream project "BIOFORMATS-test-repo" build number 363 originally caused by: Started by upstream project "Trigger" build number 389 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins2472492646774421529.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_57798_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:22:35,687 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:22:35,688 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 00:22:35,688 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:35,690 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:35,690 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:22:35,690 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:22:35,690 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:22:35,690 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:35,691 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:35,691 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:22:35,691 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:22:35,691 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:22:35,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:22:35,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:22:35,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:22:35,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:22:35,947 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:22:35,947 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:22:35,947 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:22:35,948 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:22:35,948 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 00:22:35,949 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 00:22:35,949 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 258 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-03 00:22:35,958] [main] java.version = 1.8.0_342 [testng] 00:22:35,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:22:35,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:36,006 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-03_00-22-35.log] [testng] 00:22:36,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-03 00:22:36,010] [main] testng.directory = /data [testng] [2025-03-03 00:22:36,011] [main] testng.configDirectory = /config [testng] [2025-03-03 00:22:36,023] [main] testng.multiplier = 1.0 [testng] [2025-03-03 00:22:36,023] [main] testng.in-memory = false [testng] [2025-03-03 00:22:36,023] [main] testng.allow-missing = false [testng] [2025-03-03 00:22:36,023] [main] user.language = fr [testng] [2025-03-03 00:22:36,023] [main] user.country = FR [testng] [2025-03-03 00:22:36,023] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-03 00:22:36,770] [main] ---------------------------------------- [testng] [2025-03-03 00:22:36,770] [main] Total files: 36 [testng] [2025-03-03 00:22:36,770] [main] Scan time: 0.747 s (20 ms/file) [testng] [2025-03-03 00:22:36,771] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-03 00:22:38,276] [pool-1-thread-1] Initializing /data/generated/mri-stack13.pcx: [testng] 00:22:38,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:22:38,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:38,278 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-03_00-22-38.log] [testng] 00:22:38,278 |-INFO in ch.qos.logback.core.sift.SiftProcessor@470cc146 - End of configuration. [testng] [2025-03-03 00:22:38,331] [pool-1-thread-12] Initializing /data/generated/mri-stack23.pcx: [testng] 00:22:38,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:22:38,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:38,333 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-03_00-22-38.log] [testng] 00:22:38,333 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c72b506 - End of configuration. [testng] [2025-03-03 00:22:38,343] [pool-1-thread-11] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] 00:22:38,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:22:38,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:38,344 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-03_00-22-38.log] [testng] 00:22:38,345 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1deaac6b - End of configuration. [testng] [2025-03-03 00:22:38,361] [pool-1-thread-10] Initializing /data/generated/mri-stack17.pcx: [testng] 00:22:38,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:22:38,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:38,362 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-03_00-22-38.log] [testng] 00:22:38,363 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fee3bac - End of configuration. [testng] [2025-03-03 00:22:38,372] [pool-1-thread-9] Initializing /data/generated/mri-stack5.pcx: [testng] 00:22:38,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:22:38,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:38,373 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-03_00-22-38.log] [testng] 00:22:38,373 |-INFO in ch.qos.logback.core.sift.SiftProcessor@719561d4 - End of configuration. [testng] [2025-03-03 00:22:38,381] [pool-1-thread-8] Initializing /data/generated/mri-stack7.pcx: [testng] 00:22:38,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:22:38,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:38,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-03_00-22-38.log] [testng] 00:22:38,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9832327 - End of configuration. [testng] [2025-03-03 00:22:38,390] [pool-1-thread-7] Initializing /data/generated/mri-stack11.pcx: [testng] 00:22:38,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:22:38,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:38,391 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-03_00-22-38.log] [testng] 00:22:38,391 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e9edab5 - End of configuration. [testng] [2025-03-03 00:22:38,399] [pool-1-thread-6] Initializing /data/generated/mri-stack4.pcx: [testng] 00:22:38,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:22:38,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:38,400 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-03_00-22-38.log] [testng] 00:22:38,401 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f758c0b - End of configuration. [testng] [2025-03-03 00:22:38,409] [pool-1-thread-5] Initializing /data/generated/mri-stack15.pcx: [testng] 00:22:38,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:22:38,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:38,410 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-03_00-22-38.log] [testng] 00:22:38,410 |-INFO in ch.qos.logback.core.sift.SiftProcessor@684d5052 - End of configuration. [testng] [2025-03-03 00:22:38,419] [pool-1-thread-4] Initializing /data/generated/mri-stack2.pcx: [testng] 00:22:38,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:22:38,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:38,420 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-03_00-22-38.log] [testng] 00:22:38,420 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19510582 - End of configuration. [testng] [2025-03-03 00:22:38,428] [pool-1-thread-3] Initializing /data/generated/mri-stack18.pcx: [testng] 00:22:38,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:22:38,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:38,429 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-03_00-22-38.log] [testng] 00:22:38,430 |-INFO in ch.qos.logback.core.sift.SiftProcessor@250dad73 - End of configuration. [testng] [2025-03-03 00:22:38,438] [pool-1-thread-2] Initializing /data/generated/mri-stack8.pcx: [testng] 00:22:38,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:22:38,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:38,439 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-03_00-22-38.log] [testng] 00:22:38,439 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6843df60 - End of configuration. [testng] [2025-03-03 00:22:41,079] [pool-1-thread-2] Initializing /data/generated/mri-stack3.pcx: [testng] [2025-03-03 00:22:41,088] [pool-1-thread-9] Initializing /data/generated/mri-stack22.pcx: [testng] [2025-03-03 00:22:41,096] [pool-1-thread-5] Initializing /data/generated/mri-stack20.pcx: [testng] [2025-03-03 00:22:41,102] [pool-1-thread-12] Initializing /data/generated/mri-stack19.pcx: [testng] [2025-03-03 00:22:41,109] [pool-1-thread-8] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2025-03-03 00:22:41,119] [pool-1-thread-6] Initializing /data/generated/mri-stack16.pcx: [testng] [2025-03-03 00:22:41,125] [pool-1-thread-3] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] [2025-03-03 00:22:41,134] [pool-1-thread-10] Initializing /data/generated/mri-stack1.pcx: [testng] [2025-03-03 00:22:41,143] [pool-1-thread-7] Initializing /data/generated/mri-stack24.pcx: [testng] [2025-03-03 00:22:41,152] [pool-1-thread-1] Initializing /data/generated/mri-stack21.pcx: [testng] [2025-03-03 00:22:41,162] [pool-1-thread-4] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2025-03-03 00:22:41,172] [pool-1-thread-11] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2025-03-03 00:22:41,838] [pool-1-thread-10] Initializing /data/generated/mri-stack25.pcx: [testng] [2025-03-03 00:22:41,864] [pool-1-thread-9] Initializing /data/generated/mri-stack9.pcx: [testng] [2025-03-03 00:22:41,897] [pool-1-thread-7] Initializing /data/generated/mri-stack26.pcx: [testng] [2025-03-03 00:22:41,926] [pool-1-thread-1] Initializing /data/generated/mri-stack6.pcx: [testng] [2025-03-03 00:22:41,954] [pool-1-thread-2] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2025-03-03 00:22:41,974] [pool-1-thread-6] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2025-03-03 00:22:41,996] [pool-1-thread-12] Initializing /data/generated/mri-stack12.pcx: [testng] [2025-03-03 00:22:42,011] [pool-1-thread-5] Initializing /data/generated/mri-stack14.pcx: [testng] [2025-03-03 00:22:42,269] [pool-1-thread-9] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2025-03-03 00:22:42,286] [pool-1-thread-10] Initializing /data/generated/mri-stack10.pcx: [testng] [2025-03-03 00:22:42,428] [pool-1-thread-4] Initializing /data/generated/mri-stack0.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 seconds Finished: SUCCESS