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Started by upstream project "BIOFORMATS-test-repo" build number 363 originally caused by: Started by upstream project "Trigger" build number 389 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins17789501591513272553.sh + '[' specs = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_57825_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:31:40,134 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:31:40,136 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 00:31:40,136 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:31:40,138 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:31:40,138 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:31:40,138 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:31:40,139 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:31:40,139 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:31:40,139 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:31:40,140 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:31:40,140 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:31:40,140 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:31:40,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:31:40,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:31:40,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:31:40,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:31:40,482 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:31:40,482 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:31:40,482 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:31:40,483 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:31:40,483 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 00:31:40,484 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 00:31:40,484 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 345 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-03 00:31:40,494] [main] java.version = 1.8.0_342 [testng] 00:31:40,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:31:40,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:40,550 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-03_00-31-40.log] [testng] 00:31:40,552 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-03 00:31:40,554] [main] testng.directory = /data [testng] [2025-03-03 00:31:40,554] [main] testng.configDirectory = /config [testng] [2025-03-03 00:31:40,568] [main] testng.multiplier = 1.0 [testng] [2025-03-03 00:31:40,568] [main] testng.in-memory = false [testng] [2025-03-03 00:31:40,568] [main] testng.allow-missing = false [testng] [2025-03-03 00:31:40,568] [main] user.language = fr [testng] [2025-03-03 00:31:40,568] [main] user.country = FR [testng] [2025-03-03 00:31:40,568] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-03 00:33:10,135] [main] ---------------------------------------- [testng] [2025-03-03 00:33:10,135] [main] Total files: 226 [testng] [2025-03-03 00:33:10,136] [main] Scan time: 89.566 s (396 ms/file) [testng] [2025-03-03 00:33:10,136] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-03 00:34:07,213] [pool-1-thread-1] Initializing /data/fluoview/Sample_XT.tif: [testng] 00:34:07,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:34:07,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:07,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-03_00-34-07.log] [testng] 00:34:07,215 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c428331 - End of configuration. [testng] [2025-03-03 00:34:07,327] [pool-1-thread-12] Initializing /data/fluoview/SpineAnimation.avi: [testng] 00:34:07,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:34:07,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:07,328 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-03_00-34-07.log] [testng] 00:34:07,328 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c64c854 - End of configuration. [testng] [2025-03-03 00:34:07,397] [pool-1-thread-11] Initializing /data/iplab/Blend_Fitc.IPL: [testng] 00:34:07,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:34:07,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:07,398 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-03_00-34-07.log] [testng] 00:34:07,399 |-INFO in ch.qos.logback.core.sift.SiftProcessor@783ff9ea - End of configuration. [testng] [2025-03-03 00:34:07,429] [pool-1-thread-10] Initializing /data/iplab/16Bit XRay.IPL: [testng] 00:34:07,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:34:07,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:07,430 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-03_00-34-07.log] [testng] 00:34:07,430 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33cbd26e - End of configuration. [testng] [2025-03-03 00:34:07,457] [pool-1-thread-9] Initializing /data/iplab/Color Histology.IPL: [testng] 00:34:07,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:34:07,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:07,459 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-03_00-34-07.log] [testng] 00:34:07,459 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f12c07e - End of configuration. [testng] [2025-03-03 00:34:07,479] [pool-1-thread-8] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] 00:34:07,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:34:07,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:07,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-03_00-34-07.log] [testng] 00:34:07,481 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f072ffa - End of configuration. [testng] [2025-03-03 00:34:07,604] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] 00:34:07,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:34:07,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:07,605 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-03_00-34-07.log] [testng] 00:34:07,605 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38aa7ac3 - End of configuration. [testng] [2025-03-03 00:34:07,669] [pool-1-thread-6] Initializing /data/iplab/Blend_Final.IPL: [testng] 00:34:07,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:34:07,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:07,670 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-03_00-34-07.log] [testng] 00:34:07,670 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33728687 - End of configuration. [testng] [2025-03-03 00:34:07,699] [pool-1-thread-5] Initializing /data/iplab/Color Image.IPL: [testng] 00:34:07,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:34:07,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:07,700 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-03_00-34-07.log] [testng] 00:34:07,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56a991ff - End of configuration. [testng] [2025-03-03 00:34:07,719] [pool-1-thread-4] Initializing /data/iplab/3t3 Cell.IPL: [testng] 00:34:07,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:34:07,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:07,720 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-03_00-34-07.log] [testng] 00:34:07,721 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b8727a6 - End of configuration. [testng] [2025-03-03 00:34:07,737] [pool-1-thread-3] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] 00:34:07,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:34:07,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:07,738 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-03_00-34-07.log] [testng] 00:34:07,738 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1df5367c - End of configuration. [testng] [2025-03-03 00:34:07,759] [pool-1-thread-2] Initializing /data/fluoview/SpineAnimation.tif: [testng] 00:34:07,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:34:07,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:07,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-03_00-34-07.log] [testng] 00:34:07,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33c3ea80 - End of configuration. [testng] [2025-03-03 00:34:09,797] [pool-1-thread-5] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [2025-03-03 00:34:09,838] [pool-1-thread-10] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] [2025-03-03 00:34:09,865] [pool-1-thread-4] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] [2025-03-03 00:34:09,985] [pool-1-thread-9] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] [2025-03-03 00:34:10,119] [pool-1-thread-6] Initializing /data/iplab/Blend_Tritc.IPL: [testng] [2025-03-03 00:34:10,135] [pool-1-thread-11] Initializing /data/iplab/Chromosomes.IPL: [testng] [2025-03-03 00:34:10,152] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] [2025-03-03 00:34:10,291] [pool-1-thread-12] Initializing /data/iplab/Blend_Dapi.IPL: [testng] [2025-03-03 00:34:10,370] [pool-1-thread-2] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] [2025-03-03 00:34:10,725] [pool-1-thread-7] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2025-03-03 00:34:10,976] [pool-1-thread-8] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2025-03-03 00:34:11,784] [pool-1-thread-1] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] [2025-03-03 00:34:12,519] [pool-1-thread-11] Initializing /data/fluoview/Sample_XYT.TIF: [testng] [2025-03-03 00:34:12,907] [pool-1-thread-10] Initializing /data/iplab/Actin.IPL: [testng] [2025-03-03 00:34:13,001] [pool-1-thread-6] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2025-03-03 00:34:13,327] [pool-1-thread-5] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 44 seconds Finished: SUCCESS