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Started by upstream project "BIOFORMATS-test-repo" build number 363 originally caused by: Started by upstream project "Trigger" build number 389 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins8907055642251404561.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_57954_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 04:17:39,239 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 04:17:39,241 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 04:17:39,241 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:17:39,242 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:17:39,242 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:17:39,242 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:17:39,243 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:17:39,243 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:17:39,243 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:17:39,244 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:17:39,244 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:17:39,244 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:17:39,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:17:39,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:17:39,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:17:39,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:17:39,500 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:17:39,501 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:17:39,501 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:17:39,501 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:17:39,501 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 04:17:39,502 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 04:17:39,502 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 259 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-03 04:17:39,512] [main] java.version = 1.8.0_342 [testng] 04:17:39,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:17:39,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:17:39,561 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-03_04-17-39.log] [testng] 04:17:39,563 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-03 04:17:39,565] [main] testng.directory = /data [testng] [2025-03-03 04:17:39,565] [main] testng.configDirectory = /config [testng] [2025-03-03 04:17:39,578] [main] testng.multiplier = 1.0 [testng] [2025-03-03 04:17:39,578] [main] testng.in-memory = false [testng] [2025-03-03 04:17:39,578] [main] testng.allow-missing = false [testng] [2025-03-03 04:17:39,578] [main] user.language = fr [testng] [2025-03-03 04:17:39,578] [main] user.country = FR [testng] [2025-03-03 04:17:39,578] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-03 04:17:53,691] [main] ---------------------------------------- [testng] [2025-03-03 04:17:53,691] [main] Total files: 31 [testng] [2025-03-03 04:17:53,691] [main] Scan time: 14.113 s (455 ms/file) [testng] [2025-03-03 04:17:53,691] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-03 04:18:10,629] [pool-1-thread-1] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] 04:18:10,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:18:10,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:18:10,630 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-03_04-18-10.log] [testng] 04:18:10,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46ad8889 - End of configuration. [testng] [2025-03-03 04:18:11,575] [pool-1-thread-12] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] 04:18:11,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:18:11,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:18:11,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-03_04-18-11.log] [testng] 04:18:11,577 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1533021b - End of configuration. [testng] [2025-03-03 04:18:12,134] [pool-1-thread-11] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] 04:18:12,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:18:12,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:18:12,135 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-03_04-18-12.log] [testng] 04:18:12,136 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ab5cbf5 - End of configuration. [testng] [2025-03-03 04:18:12,540] [pool-1-thread-10] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] 04:18:12,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:18:12,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:18:12,542 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-03_04-18-12.log] [testng] 04:18:12,543 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5612b428 - End of configuration. [testng] [2025-03-03 04:18:12,940] [pool-1-thread-9] Initializing /data/frans/flower.jp2: [testng] 04:18:12,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:18:12,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:18:12,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-03_04-18-12.log] [testng] 04:18:12,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ec592b7 - End of configuration. [testng] [2025-03-03 04:18:13,424] [pool-1-thread-8] Initializing /data/aryeh/flour 12.jp2: [testng] 04:18:13,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:18:13,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:18:13,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-03_04-18-13.log] [testng] 04:18:13,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26c3d41f - End of configuration. [testng] [2025-03-03 04:18:13,844] [pool-1-thread-7] Initializing /data/venu/Multichannel 3a.jpg: [testng] 04:18:13,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:18:13,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:18:13,845 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-03_04-18-13.log] [testng] 04:18:13,845 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71f69d89 - End of configuration. [testng] [2025-03-03 04:18:14,019] [pool-1-thread-6] Initializing /data/david/multichannel-2d test.jp2: [testng] 04:18:14,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:18:14,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:18:14,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-03_04-18-14.log] [testng] 04:18:14,020 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5db2b99 - End of configuration. [testng] [2025-03-03 04:18:14,487] [pool-1-thread-5] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] 04:18:14,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:18:14,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:18:14,488 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-03_04-18-14.log] [testng] 04:18:14,488 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34cfdbcf - End of configuration. [testng] [2025-03-03 04:18:14,898] [pool-1-thread-4] Initializing /data/david/C1R1_FOS.jp2: [testng] 04:18:14,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:18:14,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:18:14,899 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-03_04-18-14.log] [testng] 04:18:14,899 |-INFO in ch.qos.logback.core.sift.SiftProcessor@467d526a - End of configuration. [testng] [2025-03-03 04:18:15,561] [pool-1-thread-3] Initializing /data/misc/clown-rgb.jp2: [testng] 04:18:15,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:18:15,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:18:15,562 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-03_04-18-15.log] [testng] 04:18:15,563 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e0be1e7 - End of configuration. [testng] [2025-03-03 04:18:15,975] [pool-1-thread-2] Initializing /data/vikram/Captured 1.jp2: [testng] 04:18:15,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:18:15,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:18:15,976 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-03_04-18-15.log] [testng] 04:18:15,976 |-INFO in ch.qos.logback.core.sift.SiftProcessor@201648b6 - End of configuration. [testng] [2025-03-03 04:18:20,641] [pool-1-thread-7] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] [2025-03-03 04:18:22,019] [pool-1-thread-3] Initializing /data/kraig/head.jp2: [testng] [2025-03-03 04:18:22,488] [pool-1-thread-2] Initializing /data/venu/Multichannel 3.jp2: [testng] [2025-03-03 04:18:23,004] [pool-1-thread-8] Initializing /data/vikram/Captured 5.jp2: [testng] [2025-03-03 04:18:25,695] [pool-1-thread-1] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] [2025-03-03 04:18:26,578] [pool-1-thread-11] Initializing /data/vikram/Captured 3.jp2: [testng] [2025-03-03 04:18:29,770] [pool-1-thread-8] Initializing /data/vikram/Captured 2.jp2: [testng] [2025-03-03 04:18:30,264] [pool-1-thread-3] Initializing /data/david/000000_000001.jpx: [testng] [2025-03-03 04:18:31,671] [pool-1-thread-7] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] [2025-03-03 04:18:33,258] [pool-1-thread-11] Initializing /data/big-images/2kx2k.jpf: [testng] [2025-03-03 04:18:34,477] [pool-1-thread-10] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] [2025-03-03 04:18:36,525] [pool-1-thread-8] Initializing /data/vikram/Captured 4.jp2: [testng] [2025-03-03 04:18:37,274] [pool-1-thread-9] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2025-03-03 04:18:41,448] [pool-1-thread-8] Initializing /data/david/cy5-tph.jp2: [testng] [2025-03-03 04:18:42,176] [pool-1-thread-3] Initializing /data/big-images/8kx8k.jpf: [testng] [2025-03-03 04:18:42,786] [pool-1-thread-2] Initializing /data/misc/clown-rgb.jbig: [testng] [2025-03-03 04:18:44,155] [pool-1-thread-1] Initializing /data/big-images/4kx4k.jpf: [testng] [2025-03-03 04:18:45,659] [pool-1-thread-10] Initializing /data/misc/clown-rgb.jpc: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 35 seconds Finished: SUCCESS