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Started by upstream project "BIOFORMATS-test-repo" build number 41 originally caused by: Started by upstream project "Trigger" build number 47 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins12358945345481084212.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_5797_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:55:10,455 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:55:10,457 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:55:10,457 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:55:10,458 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:55:10,458 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:55:10,459 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:55:10,459 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:55:10,459 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:55:10,459 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:55:10,460 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:55:10,460 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:55:10,460 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:55:10,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:55:10,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:55:10,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:55:10,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:55:10,750 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:55:10,750 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:55:10,750 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:55:10,751 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:55:10,751 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:55:10,752 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:55:10,752 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 293 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-22 01:55:10,763] [main] java.version = 1.8.0_342 [testng] 01:55:10,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:55:10,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:10,819 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-22_01-55-10.log] [testng] 01:55:10,821 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-22 01:55:10,823] [main] testng.directory = /data [testng] [2024-04-22 01:55:10,823] [main] testng.configDirectory = /config [testng] [2024-04-22 01:55:10,838] [main] testng.multiplier = 1.0 [testng] [2024-04-22 01:55:10,838] [main] testng.in-memory = false [testng] [2024-04-22 01:55:10,838] [main] testng.allow-missing = false [testng] [2024-04-22 01:55:10,838] [main] user.language = fr [testng] [2024-04-22 01:55:10,839] [main] user.country = FR [testng] [2024-04-22 01:55:10,839] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-22 02:02:58,311] [main] ---------------------------------------- [testng] [2024-04-22 02:02:58,312] [main] Total files: 7329 [testng] [2024-04-22 02:02:58,312] [main] Scan time: 467.472 s (63 ms/file) [testng] [2024-04-22 02:02:58,312] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-22 02:06:24,561] [pool-1-thread-1] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] 02:06:24,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:06:24,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:24,562 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-22_02-06-24.log] [testng] 02:06:24,563 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19e28c49 - End of configuration. [testng] [2024-04-22 02:06:24,628] [pool-1-thread-12] Initializing /data/samples/zserEight.stk: [testng] 02:06:24,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:06:24,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:24,629 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-22_02-06-24.log] [testng] 02:06:24,629 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53257fe7 - End of configuration. [testng] [2024-04-22 02:06:24,653] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] 02:06:24,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:06:24,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:24,654 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-22_02-06-24.log] [testng] 02:06:24,654 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7954f60a - End of configuration. [testng] [2024-04-22 02:06:24,709] [pool-1-thread-10] Initializing /data/graham/G_Wright raw.stk: [testng] 02:06:24,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:06:24,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:24,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-22_02-06-24.log] [testng] 02:06:24,710 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50146ded - End of configuration. [testng] [2024-04-22 02:06:24,760] [pool-1-thread-9] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] 02:06:24,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:06:24,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:24,761 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-22_02-06-24.log] [testng] 02:06:24,761 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fc3671c - End of configuration. [testng] [2024-04-22 02:06:24,837] [pool-1-thread-8] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] 02:06:24,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:06:24,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:24,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-22_02-06-24.log] [testng] 02:06:24,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@298435a2 - End of configuration. [testng] [2024-04-22 02:06:24,864] [pool-1-thread-7] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] 02:06:24,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:06:24,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:24,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-22_02-06-24.log] [testng] 02:06:24,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@672f02ee - End of configuration. [testng] [2024-04-22 02:06:24,968] [pool-1-thread-6] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] 02:06:24,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:06:24,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:24,969 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-22_02-06-24.log] [testng] 02:06:24,969 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61edc860 - End of configuration. [testng] [2024-04-22 02:06:25,064] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] 02:06:25,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:06:25,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:25,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-22_02-06-25.log] [testng] 02:06:25,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aa9f64 - End of configuration. [testng] [2024-04-22 02:06:25,131] [pool-1-thread-4] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] 02:06:25,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:06:25,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:25,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-22_02-06-25.log] [testng] 02:06:25,133 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f6ff18f - End of configuration. [testng] [2024-04-22 02:06:25,178] [pool-1-thread-3] Initializing /data/josh/2101to800.stk: [testng] 02:06:25,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:06:25,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:25,180 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-22_02-06-25.log] [testng] 02:06:25,180 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7db40c18 - End of configuration. [testng] [2024-04-22 02:06:25,784] [pool-1-thread-2] Initializing /data/jacek/YFP2trans.tif: [testng] 02:06:25,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:06:25,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:25,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-22_02-06-25.log] [testng] 02:06:25,785 |-INFO in ch.qos.logback.core.sift.SiftProcessor@401fa117 - End of configuration. [testng] [2024-04-22 02:06:27,595] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-04-22 02:06:29,472] [pool-1-thread-12] Initializing /data/josh/2101to600astk.stk: [testng] [2024-04-22 02:06:37,642] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-04-22 02:06:37,817] [pool-1-thread-11] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-04-22 02:06:38,022] [pool-1-thread-10] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-04-22 02:06:38,078] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-04-22 02:06:38,150] [pool-1-thread-2] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-04-22 02:06:38,288] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-22 02:06:38,337] [pool-1-thread-6] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-04-22 02:06:38,449] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-04-22 02:06:38,689] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-04-22 02:06:38,849] [pool-1-thread-8] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-04-22 02:06:40,092] [pool-1-thread-5] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-04-22 02:06:40,114] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-04-22 02:06:40,314] [pool-1-thread-11] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-04-22 02:06:40,509] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-04-22 02:06:40,531] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-04-22 02:06:40,594] [pool-1-thread-4] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-04-22 02:06:40,652] [pool-1-thread-2] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-04-22 02:06:40,802] [pool-1-thread-5] Initializing /data/steve/Experiment2.stk: [testng] [2024-04-22 02:06:40,885] [pool-1-thread-9] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-04-22 02:06:40,961] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-04-22 02:06:41,010] [pool-1-thread-11] Used files list does not include base file [testng] [2024-04-22 02:06:41,362] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-04-22 02:06:41,509] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-04-22 02:06:41,530] [pool-1-thread-5] Used files list does not include base file [testng] [2024-04-22 02:06:41,611] [pool-1-thread-3] Initializing /data/cumol-test-series/23.001: [testng] [2024-04-22 02:06:41,655] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-22 02:06:41,709] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-04-22 02:06:41,816] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-04-22 02:06:41,882] [pool-1-thread-7] Used files list does not include base file [testng] [2024-04-22 02:06:42,080] [pool-1-thread-9] Initializing /data/thomas/test.tif: [testng] [2024-04-22 02:06:42,154] [pool-1-thread-5] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-04-22 02:06:42,640] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-04-22 02:06:42,684] [pool-1-thread-6] Used files list does not include base file [testng] [2024-04-22 02:06:42,702] [pool-1-thread-10] Initializing /data/qa-16915/m-04.tif: [testng] [2024-04-22 02:06:43,048] [pool-1-thread-5] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-04-22 02:06:43,167] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-22 02:06:43,345] [pool-1-thread-3] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-04-22 02:06:43,756] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-04-22 02:06:43,772] [pool-1-thread-4] Used files list does not include base file [testng] [2024-04-22 02:06:43,828] [pool-1-thread-2] Initializing /data/josh/2101to400astk.stk: [testng] [2024-04-22 02:06:45,406] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-04-22 02:06:45,452] [pool-1-thread-5] Used files list does not include base file [testng] [2024-04-22 02:06:45,480] [pool-1-thread-11] Initializing /data/ascb/mt aim.tif: [testng] [2024-04-22 02:06:45,630] [pool-1-thread-4] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-04-22 02:06:45,982] [pool-1-thread-7] Initializing /data/qa-16915/m-02.tif: [testng] [2024-04-22 02:06:46,575] [pool-1-thread-11] Initializing /data/samples/zserSixteen.stk: [testng] [2024-04-22 02:06:46,600] [pool-1-thread-9] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-04-22 02:06:46,909] [pool-1-thread-6] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-04-22 02:06:47,116] [pool-1-thread-11] Initializing /data/josh/2101to600f.stk: [testng] [2024-04-22 02:06:49,594] [pool-1-thread-10] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-04-22 02:06:49,669] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-04-22 02:06:50,268] [pool-1-thread-5] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-04-22 02:06:50,782] [pool-1-thread-9] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-04-22 02:06:50,984] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-22 02:06:51,518] [pool-1-thread-4] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-04-22 02:06:51,581] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-04-22 02:06:52,485] [pool-1-thread-5] Initializing /data/dave/Z Series.stk: [testng] [2024-04-22 02:06:52,740] [pool-1-thread-7] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-04-22 02:06:52,788] [pool-1-thread-9] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-04-22 02:06:53,634] [pool-1-thread-5] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-04-22 02:06:53,856] [pool-1-thread-4] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-04-22 02:06:54,337] [pool-1-thread-7] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-04-22 02:06:54,514] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-04-22 02:06:54,718] [pool-1-thread-5] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-04-22 02:06:55,033] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-04-22 02:06:55,338] [pool-1-thread-5] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-04-22 02:06:58,517] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-04-22 02:06:58,553] [pool-1-thread-10] Used files list does not include base file [testng] [2024-04-22 02:06:58,581] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-22 02:06:58,855] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-22 02:06:59,009] [pool-1-thread-5] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-04-22 02:06:59,272] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-04-22 02:06:59,350] [pool-1-thread-10] Used files list does not include base file [testng] [2024-04-22 02:07:00,021] [pool-1-thread-9] Initializing 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[pool-1-thread-5] Initializing /data/grant/X.STK: [testng] [2024-04-22 02:07:08,595] [pool-1-thread-8] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-04-22 02:07:08,708] [pool-1-thread-1] Initializing /data/samples/10xcalib.tif: [testng] [2024-04-22 02:07:08,749] [pool-1-thread-4] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-04-22 02:07:08,844] [pool-1-thread-11] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-04-22 02:07:09,505] [pool-1-thread-1] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-04-22 02:07:10,169] [pool-1-thread-5] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-04-22 02:07:11,224] [pool-1-thread-8] Initializing /data/samples/diatoms3d.stk: [testng] [2024-04-22 02:07:11,331] [pool-1-thread-5] Initializing /data/david/tl4.tif: [testng] [2024-04-22 02:07:13,695] [pool-1-thread-10] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-04-22 02:07:14,369] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-04-22 02:07:14,812] [pool-1-thread-8] Initializing /data/qa-16915/m-01.tif: [testng] [2024-04-22 02:07:15,236] [pool-1-thread-11] Initializing /data/alex/Selected FITC.stk: [testng] [2024-04-22 02:07:15,652] [pool-1-thread-1] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-04-22 02:07:15,712] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-04-22 02:07:17,190] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-04-22 02:07:17,453] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-22 02:07:17,919] [pool-1-thread-11] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-04-22 02:07:18,482] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-04-22 02:07:19,870] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-22 02:07:19,940] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-04-22 02:07:20,911] [pool-1-thread-1] Initializing /data/ascb/golgi marker.tif: [testng] [2024-04-22 02:07:21,095] [pool-1-thread-4] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-04-22 02:07:22,108] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-04-22 02:07:22,267] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-04-22 02:07:22,350] [pool-1-thread-3] Used files list does not include base file [testng] [2024-04-22 02:07:22,843] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-04-22 02:07:22,924] [pool-1-thread-1] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-04-22 02:07:23,526] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-04-22 02:07:23,727] [pool-1-thread-6] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-04-22 02:07:23,893] [pool-1-thread-8] Initializing /data/aaron/metamorph.stk: [testng] [2024-04-22 02:07:24,067] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-04-22 02:07:24,973] [pool-1-thread-2] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-04-22 02:07:25,314] [pool-1-thread-4] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-04-22 02:07:25,464] [pool-1-thread-5] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-04-22 02:07:26,007] [pool-1-thread-10] Initializing 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Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-04-22 02:07:45,032] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-22 02:07:45,403] [pool-1-thread-1] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-04-22 02:07:47,095] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-22 02:07:47,155] [pool-1-thread-8] Initializing /data/josh/2101to600b.stk: [testng] [2024-04-22 02:07:48,645] [pool-1-thread-12] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-04-22 02:07:49,335] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-04-22 02:07:49,367] [pool-1-thread-2] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-04-22 02:07:49,642] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-04-22 02:07:50,431] [pool-1-thread-6] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-04-22 02:07:50,564] [pool-1-thread-2] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-04-22 02:07:50,630] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-04-22 02:07:50,676] [pool-1-thread-10] Used files list does not include base file [testng] [2024-04-22 02:07:50,843] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-04-22 02:07:51,012] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-04-22 02:07:52,131] [pool-1-thread-2] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-04-22 02:07:52,273] [pool-1-thread-6] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-04-22 02:07:52,876] [pool-1-thread-4] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-04-22 02:07:53,728] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-04-22 02:07:53,758] [pool-1-thread-10] Used files list does not include base file [testng] [2024-04-22 02:07:54,321] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-04-22 02:07:54,411] [pool-1-thread-10] Used files list does not include base file [testng] [2024-04-22 02:07:54,978] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-04-22 02:07:55,084] [pool-1-thread-5] Used files list does not include base file [testng] [2024-04-22 02:07:55,086] [pool-1-thread-2] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-04-22 02:07:57,652] [pool-1-thread-6] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-04-22 02:07:57,809] [pool-1-thread-2] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-04-22 02:07:58,343] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-04-22 02:07:58,409] [pool-1-thread-10] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-04-22 02:07:59,274] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-04-22 02:07:59,334] [pool-1-thread-8] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-04-22 02:07:59,622] [pool-1-thread-5] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-04-22 02:08:00,524] [pool-1-thread-8] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-04-22 02:08:00,588] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-04-22 02:08:00,639] [pool-1-thread-5] Used files list does not include base file [testng] [2024-04-22 02:08:00,641] [pool-1-thread-2] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-04-22 02:08:00,836] [pool-1-thread-6] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-04-22 02:08:03,097] [pool-1-thread-3] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-04-22 02:08:04,995] [pool-1-thread-8] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-04-22 02:08:05,035] [pool-1-thread-2] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-04-22 02:08:05,237] [pool-1-thread-5] Initializing /data/jerome/deconv.STK: [testng] [2024-04-22 02:08:05,298] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-04-22 02:08:06,051] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-04-22 02:08:06,472] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-04-22 02:08:06,542] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-04-22 02:08:06,605] [pool-1-thread-4] Initializing /data/jae/RGB_s34.tif: [testng] [2024-04-22 02:08:07,248] [pool-1-thread-10] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-04-22 02:08:07,338] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-04-22 02:08:07,411] [pool-1-thread-8] Used files list does not include base file [testng] [2024-04-22 02:08:07,697] [pool-1-thread-5] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-04-22 02:08:08,534] [pool-1-thread-2] Initializing /data/steve/Experiment2.tif: [testng] [2024-04-22 02:08:08,659] [pool-1-thread-5] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-04-22 02:08:08,757] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-22 02:08:09,252] [pool-1-thread-12] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-04-22 02:08:09,951] [pool-1-thread-2] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-04-22 02:08:12,345] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-04-22 02:08:13,334] [pool-1-thread-8] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-04-22 02:08:13,491] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-22 02:08:13,563] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-04-22 02:08:13,617] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-22 02:08:14,556] [pool-1-thread-8] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-04-22 02:08:14,645] [pool-1-thread-10] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-04-22 02:08:14,750] [pool-1-thread-6] Initializing /data/thomas/t_test2001.tif: [testng] [2024-04-22 02:08:14,887] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-04-22 02:08:15,346] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-04-22 02:08:15,414] [pool-1-thread-8] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-04-22 02:08:15,499] [pool-1-thread-6] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-04-22 02:08:15,763] [pool-1-thread-10] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-04-22 02:08:15,979] [pool-1-thread-12] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-04-22 02:08:16,240] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-04-22 02:08:16,275] [pool-1-thread-8] Used files list does not include base file [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 24 minutes 11 seconds Finished: SUCCESS