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Started by upstream project "BIOFORMATS-test-repo" build number 364 originally caused by: Started by upstream project "Trigger" build number 390 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins16355064455932884414.sh + '[' pict = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58014_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:48:34,349 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:48:34,351 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 00:48:34,351 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:48:34,352 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:48:34,352 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:48:34,353 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:48:34,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:48:34,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:48:34,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:48:34,354 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:48:34,354 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:48:34,355 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:48:34,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:48:34,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:48:34,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:48:34,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:48:34,535 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:48:34,535 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:48:34,535 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:48:34,536 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:48:34,536 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 00:48:34,537 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 00:48:34,537 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 184 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-04 00:48:34,545] [main] java.version = 11.0.16 [testng] 00:48:34,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:48:34,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:34,588 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-04_00-48-34.log] [testng] 00:48:34,589 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-04 00:48:34,591] [main] testng.directory = /data [testng] [2025-03-04 00:48:34,592] [main] testng.configDirectory = /config [testng] [2025-03-04 00:48:34,602] [main] testng.multiplier = 1.0 [testng] [2025-03-04 00:48:34,603] [main] testng.in-memory = false [testng] [2025-03-04 00:48:34,603] [main] testng.allow-missing = false [testng] [2025-03-04 00:48:34,603] [main] user.language = en [testng] [2025-03-04 00:48:34,603] [main] user.country = ${user.country} [testng] [2025-03-04 00:48:34,604] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-04 00:48:35,170] [main] ---------------------------------------- [testng] [2025-03-04 00:48:35,170] [main] Total files: 25 [testng] [2025-03-04 00:48:35,170] [main] Scan time: 0.566 s (22 ms/file) [testng] [2025-03-04 00:48:35,170] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-04 00:48:37,842] [pool-1-thread-1] Initializing /data/misc/planet2.pict: [testng] 00:48:37,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:48:37,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:37,848 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-04_00-48-37.log] [testng] 00:48:37,848 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2756c8d8 - End of configuration. [testng] [2025-03-04 00:48:37,932] [pool-1-thread-12] Initializing /data/brian/images/FLAG_B32.pct: [testng] 00:48:37,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:48:37,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:37,934 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-04_00-48-37.log] [testng] 00:48:37,935 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23d61918 - End of configuration. [testng] [2025-03-04 00:48:37,982] [pool-1-thread-11] Initializing /data/misc/planet.pict: [testng] 00:48:37,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:48:37,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:37,983 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-04_00-48-37.log] [testng] 00:48:37,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b12466c - End of configuration. [testng] [2025-03-04 00:48:38,046] [pool-1-thread-10] Initializing /data/brian/images/WHT.PCT: [testng] 00:48:38,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:48:38,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:38,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-04_00-48-38.log] [testng] 00:48:38,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70a550df - End of configuration. [testng] [2025-03-04 00:48:38,107] [pool-1-thread-9] Initializing /data/brian/images/GRN.PCT: [testng] 00:48:38,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:48:38,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:38,108 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-04_00-48-38.log] [testng] 00:48:38,108 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cee34e7 - End of configuration. [testng] [2025-03-04 00:48:38,164] [pool-1-thread-8] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 00:48:38,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:48:38,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:38,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-04_00-48-38.log] [testng] 00:48:38,165 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2505476 - End of configuration. [testng] [2025-03-04 00:48:39,088] [pool-1-thread-7] Initializing /data/brian/images/VENUS.pct: [testng] 00:48:39,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:48:39,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:39,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-04_00-48-39.log] [testng] 00:48:39,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f2c3c45 - End of configuration. [testng] [2025-03-04 00:48:39,147] [pool-1-thread-6] Initializing /data/brian/images/FLAG_RGB.pct: [testng] 00:48:39,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:48:39,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:39,148 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-04_00-48-39.log] [testng] 00:48:39,149 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79bd8b34 - End of configuration. [testng] [2025-03-04 00:48:39,192] [pool-1-thread-5] Initializing /data/wayne/PotatoMeristem.pict: [testng] 00:48:39,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:48:39,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:39,193 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-04_00-48-39.log] [testng] 00:48:39,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@699338c9 - End of configuration. [testng] [2025-03-04 00:48:39,263] [pool-1-thread-4] Initializing /data/jqd/mire32.pict: [testng] 00:48:39,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:48:39,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:39,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-04_00-48-39.log] [testng] 00:48:39,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@153f88b6 - End of configuration. [testng] [2025-03-04 00:48:39,444] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 00:48:39,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:48:39,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:39,445 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-04_00-48-39.log] [testng] 00:48:39,445 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bc348d1 - End of configuration. [testng] [2025-03-04 00:48:39,603] [pool-1-thread-2] Initializing /data/jqd/mireSixteen.pict: [testng] 00:48:39,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:48:39,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:39,604 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-04_00-48-39.log] [testng] 00:48:39,605 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d712584 - End of configuration. [testng] [2025-03-04 00:48:41,769] [pool-1-thread-2] Initializing /data/brian/images/RED.PCT: [testng] [2025-03-04 00:48:41,827] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2025-03-04 00:48:41,906] [pool-1-thread-8] Initializing /data/jqd/32bit.pict: [testng] [2025-03-04 00:48:41,967] [pool-1-thread-4] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] [2025-03-04 00:48:42,030] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2025-03-04 00:48:42,363] [pool-1-thread-1] Initializing /data/brian/images/YEL.PCT: [testng] [2025-03-04 00:48:42,476] [pool-1-thread-7] Initializing /data/brian/images/TRU256.PCT: [testng] [2025-03-04 00:48:42,548] [pool-1-thread-11] Initializing /data/brian/images/BLK.PCT: [testng] [2025-03-04 00:48:42,596] [pool-1-thread-9] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2025-03-04 00:48:42,645] [pool-1-thread-10] Initializing /data/jqd/sixteenBit.pict: [testng] [2025-03-04 00:48:42,735] [pool-1-thread-5] Initializing /data/misc/planet.png: [testng] [2025-03-04 00:48:42,947] [pool-1-thread-3] Initializing /data/misc/swlogo.pict: [testng] [2025-03-04 00:48:43,438] [pool-1-thread-5] Initializing /data/brian/images/BLU.PCT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 12 seconds Finished: SUCCESS