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Started by upstream project "BIOFORMATS-test-repo" build number 364
originally caused by:
 Started by upstream project "Trigger" build number 390
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins12585741368467377254.sh
+ '[' minc = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_58035_merge_ci -v /uod/idr/repos/curated/minc:/data -v /uod/idr-scratch/merge-ci/curated/minc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 01:31:57,952 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
   [testng] 01:31:57,954 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service.
   [testng] 01:31:57,954 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:31:57,955 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:31:57,955 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:31:57,956 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:31:57,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:31:57,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:31:57,957 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:31:57,957 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:31:57,958 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:31:57,958 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:31:58,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:31:58,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:31:58,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:31:58,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:31:58,174 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:31:58,174 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:31:58,174 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:31:58,175 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:31:58,175 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration.
   [testng] 01:31:58,176 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point
   [testng] 01:31:58,176 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 219 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2025-03-04 01:31:58,186] [main] java.version = 11.0.16
   [testng] 01:31:58,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:31:58,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:31:58,234 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-04_01-31-58.log]
   [testng] 01:31:58,235 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration.
   [testng] [2025-03-04 01:31:58,237] [main] testng.directory = /data
   [testng] [2025-03-04 01:31:58,238] [main] testng.configDirectory = /config
   [testng] [2025-03-04 01:31:58,248] [main] testng.multiplier = 1.0
   [testng] [2025-03-04 01:31:58,249] [main] testng.in-memory = false
   [testng] [2025-03-04 01:31:58,250] [main] testng.allow-missing = false
   [testng] [2025-03-04 01:31:58,250] [main] user.language = en
   [testng] [2025-03-04 01:31:58,250] [main] user.country = ${user.country}
   [testng] [2025-03-04 01:31:58,250] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2025-03-04 01:31:58,902] [main] ----------------------------------------
   [testng] [2025-03-04 01:31:58,903] [main] Total files: 15
   [testng] [2025-03-04 01:31:58,903] [main] Scan time: 0.652 s (43 ms/file)
   [testng] [2025-03-04 01:31:58,903] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2025-03-04 01:32:11,407] [pool-1-thread-1] Initializing /data/samples/ICBM/icbm_template_3.00mm.mnc: 
   [testng] 01:32:11,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:32:11,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:11,409 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-04_01-32-11.log]
   [testng] 01:32:11,410 |-INFO in ch.qos.logback.core.sift.SiftProcessor@343fa24f - End of configuration.
   [testng] [2025-03-04 01:32:11,751] [pool-1-thread-12] Initializing /data/bigbrain/8-bit_full_400um_2009b_sym.mnc: 
   [testng] 01:32:11,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:32:11,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:11,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-04_01-32-11.log]
   [testng] 01:32:11,754 |-INFO in ch.qos.logback.core.sift.SiftProcessor@738effae - End of configuration.
   [testng] [2025-03-04 01:32:12,973] [pool-1-thread-11] Initializing /data/samples/ICBM/icbm_template_one.50mm.mnc: 
   [testng] 01:32:12,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:32:12,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:12,974 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-04_01-32-12.log]
   [testng] 01:32:12,974 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1394d79e - End of configuration.
   [testng] [2025-03-04 01:32:13,301] [pool-1-thread-10] Initializing /data/daren/test_32bit_float.mnc: 
   [testng] 01:32:13,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:32:13,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:13,302 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-04_01-32-13.log]
   [testng] 01:32:13,302 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c4f0392 - End of configuration.
   [testng] [2025-03-04 01:32:13,936] [pool-1-thread-9] Initializing /data/samples/ICBM/icbm_atlas_cerebellum_avg_53_mask_1mm.mnc: 
   [testng] 01:32:13,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:32:13,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:13,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-04_01-32-13.log]
   [testng] 01:32:13,938 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62f8f848 - End of configuration.
   [testng] [2025-03-04 01:32:14,272] [pool-1-thread-8] Initializing /data/bigbrain/pm6479o.mnc: 
   [testng] 01:32:14,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:32:14,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:14,273 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-04_01-32-14.log]
   [testng] 01:32:14,273 |-INFO in ch.qos.logback.core.sift.SiftProcessor@345bbf4e - End of configuration.
   [testng] [2025-03-04 01:32:15,201] [pool-1-thread-7] Initializing /data/bigbrain/full16_400um_2009b_sym.mnc: 
   [testng] 01:32:15,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:32:15,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:15,202 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-04_01-32-15.log]
   [testng] 01:32:15,202 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3499242a - End of configuration.
   [testng] [2025-03-04 01:32:17,405] [pool-1-thread-6] Initializing /data/samples/N3/average_305_mask_1mm.mnc: 
   [testng] 01:32:17,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:32:17,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:17,406 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-04_01-32-17.log]
   [testng] 01:32:17,406 |-INFO in ch.qos.logback.core.sift.SiftProcessor@447daa6d - End of configuration.
   [testng] [2025-03-04 01:32:17,778] [pool-1-thread-5] Initializing /data/samples/ICBM/icbm_template_one.00mm.mnc: 
   [testng] 01:32:17,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:32:17,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:17,779 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-04_01-32-17.log]
   [testng] 01:32:17,780 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32a14e34 - End of configuration.
   [testng] [2025-03-04 01:32:18,104] [pool-1-thread-4] Initializing /data/samples/ICBM/icbm_template_4.00mm.mnc: 
   [testng] 01:32:18,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:32:18,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:18,105 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-04_01-32-18.log]
   [testng] 01:32:18,105 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4be614a1 - End of configuration.
   [testng] [2025-03-04 01:32:18,460] [pool-1-thread-3] Initializing /data/qa-17215/IBSR01.mnc: 
   [testng] 01:32:18,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:32:18,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:18,461 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-04_01-32-18.log]
   [testng] 01:32:18,461 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34cb6ced - End of configuration.
   [testng] [2025-03-04 01:32:18,839] [pool-1-thread-2] Initializing /data/samples/ICBM/icbm_template_zero.50mm.mnc: 
   [testng] 01:32:18,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:32:18,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:18,840 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-04_01-32-18.log]
   [testng] 01:32:18,840 |-INFO in ch.qos.logback.core.sift.SiftProcessor@136cdaa8 - End of configuration.

BUILD SUCCESSFUL
Total time: 45 seconds
Finished: SUCCESS