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Started by upstream project "BIOFORMATS-test-repo" build number 364 originally caused by: Started by upstream project "Trigger" build number 390 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins4747421043693240122.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58048_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:46:33,113 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:46:33,115 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 01:46:33,115 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:46:33,116 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:46:33,116 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:46:33,117 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:46:33,117 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:46:33,117 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:46:33,117 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:46:33,118 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:46:33,118 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:46:33,119 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:46:33,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:46:33,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:46:33,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:46:33,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:46:33,312 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:46:33,312 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:46:33,312 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:46:33,313 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:46:33,313 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 01:46:33,313 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 01:46:33,314 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 197 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-04 01:46:33,322] [main] java.version = 11.0.16 [testng] 01:46:33,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:46:33,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:33,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-04_01-46-33.log] [testng] 01:46:33,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-04 01:46:33,372] [main] testng.directory = /data [testng] [2025-03-04 01:46:33,372] [main] testng.configDirectory = /config [testng] [2025-03-04 01:46:33,382] [main] testng.multiplier = 1.0 [testng] [2025-03-04 01:46:33,383] [main] testng.in-memory = false [testng] [2025-03-04 01:46:33,383] [main] testng.allow-missing = false [testng] [2025-03-04 01:46:33,383] [main] user.language = en [testng] [2025-03-04 01:46:33,383] [main] user.country = ${user.country} [testng] [2025-03-04 01:46:33,383] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-04 02:01:25,161] [main] ---------------------------------------- [testng] [2025-03-04 02:01:25,161] [main] Total files: 14121 [testng] [2025-03-04 02:01:25,162] [main] Scan time: 891.778 s (63 ms/file) [testng] [2025-03-04 02:01:25,162] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 261 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-04 02:21:59,566] [pool-1-thread-1] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_Vec_ISOtoDA_4well/Dish6_w1FRET_s1_t1.TIF: [testng] 02:21:59,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:21:59,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:21:59,569 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-04_02-21-59.log] [testng] 02:21:59,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e8fce39 - End of configuration. [testng] [2025-03-04 02:22:04,929] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] 02:22:04,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:22:04,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:04,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-04_02-22-04.log] [testng] 02:22:04,930 |-INFO in ch.qos.logback.core.sift.SiftProcessor@448b501b - End of configuration. [testng] [2025-03-04 02:22:05,753] [pool-1-thread-11] Initializing /data/josh/2101to600b.stk: [testng] 02:22:05,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:22:05,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:05,754 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-04_02-22-05.log] [testng] 02:22:05,754 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b1e9780 - End of configuration. [testng] [2025-03-04 02:22:12,007] [pool-1-thread-10] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] 02:22:12,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:22:12,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:12,008 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-04_02-22-12.log] [testng] 02:22:12,008 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bba4942 - End of configuration. [testng] [2025-03-04 02:22:13,261] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] 02:22:13,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:22:13,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:13,262 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-04_02-22-13.log] [testng] 02:22:13,262 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bd85cd7 - End of configuration. [testng] [2025-03-04 02:22:16,343] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] 02:22:16,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:22:16,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:16,344 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-04_02-22-16.log] [testng] 02:22:16,345 |-INFO in ch.qos.logback.core.sift.SiftProcessor@488b1feb - End of configuration. [testng] [2025-03-04 02:22:17,053] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] 02:22:17,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:22:17,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:17,054 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-04_02-22-17.log] [testng] 02:22:17,054 |-INFO in ch.qos.logback.core.sift.SiftProcessor@872110d - End of configuration. [testng] [2025-03-04 02:22:17,890] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] 02:22:17,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:22:17,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:17,890 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-04_02-22-17.log] [testng] 02:22:17,891 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17e47296 - End of configuration. [testng] [2025-03-04 02:22:19,219] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] 02:22:19,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:22:19,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:19,220 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-04_02-22-19.log] [testng] 02:22:19,220 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25959bc8 - End of configuration. [testng] [2025-03-04 02:22:20,237] [pool-1-thread-5] Used files list does not include base file [testng] [2025-03-04 02:22:20,239] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] 02:22:20,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:22:20,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:20,240 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-04_02-22-20.log] [testng] 02:22:20,240 |-INFO in ch.qos.logback.core.sift.SiftProcessor@625c8f32 - End of configuration. [testng] [2025-03-04 02:22:21,250] [pool-1-thread-4] Used files list does not include base file [testng] [2025-03-04 02:22:21,252] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] 02:22:21,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:22:21,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:21,252 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-04_02-22-21.log] [testng] 02:22:21,253 |-INFO in ch.qos.logback.core.sift.SiftProcessor@723370a0 - End of configuration. [testng] [2025-03-04 02:22:22,003] [pool-1-thread-3] Used files list does not include base file [testng] [2025-03-04 02:22:22,005] [pool-1-thread-2] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] 02:22:22,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:22:22,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:22,006 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-04_02-22-22.log] [testng] 02:22:22,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cd0e812 - End of configuration. [testng] [2025-03-04 02:22:28,763] [pool-1-thread-2] Initializing /data/samples/zserEight.stk: [testng] [2025-03-04 02:22:31,308] [pool-1-thread-10] Initializing /data/ascb/golgi marker.tif: [testng] [2025-03-04 02:22:34,905] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2025-03-04 02:22:35,990] [pool-1-thread-8] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2025-03-04 02:22:37,003] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2025-03-04 02:22:38,466] [pool-1-thread-2] Used files list does not include base file [testng] [2025-03-04 02:22:40,888] [pool-1-thread-10] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2025-03-04 02:22:41,994] [pool-1-thread-12] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211111_HTR5_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-03-04 02:22:44,527] [pool-1-thread-7] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2025-03-04 02:22:47,977] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_4well/Dish3_w1FRET_s1_t1.TIF: [testng] [2025-03-04 02:22:56,615] [pool-1-thread-10] Initializing /data/grant/X.STK: [testng] [2025-03-04 02:22:58,382] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2025-03-04 02:22:59,743] [pool-1-thread-7] Used files list does not include base file [testng] [2025-03-04 02:23:01,254] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2025-03-04 02:23:05,773] [pool-1-thread-8] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2025-03-04 02:23:08,597] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-04 02:23:09,763] [pool-1-thread-10] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_HTR5_ISOto5HT_35mmdish/5HT/Dish1_w1FRET_t1.TIF: [testng] [2025-03-04 02:23:14,995] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-04 02:23:17,159] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2025-03-04 02:23:18,480] [pool-1-thread-4] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2025-03-04 02:23:32,494] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2025-03-04 02:23:33,423] [pool-1-thread-11] Used files list does not include base file [testng] [2025-03-04 02:23:38,096] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2025-03-04 02:23:39,588] [pool-1-thread-2] Used files list does not include base file [testng] [2025-03-04 02:23:42,302] [pool-1-thread-5] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2025-03-04 02:23:43,439] [pool-1-thread-9] Initializing /data/samples/zserSixteen.stk: [testng] [2025-03-04 02:23:44,370] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2025-03-04 02:23:47,856] [pool-1-thread-8] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2025-03-04 02:23:50,423] [pool-1-thread-11] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_4well/Dish9_w1FRET_s1_t1.TIF: [testng] [2025-03-04 02:23:59,288] [pool-1-thread-9] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2025-03-04 02:24:11,735] [pool-1-thread-5] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1E_ISOto5HT_35mm/Dish1_w1FRET_t1.TIF: [testng] [2025-03-04 02:24:14,223] [pool-1-thread-7] Initializing 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[pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2025-03-04 02:31:16,543] [pool-1-thread-2] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2025-03-04 02:31:22,589] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2025-03-04 02:31:57,310] [pool-1-thread-8] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2025-03-04 02:32:03,092] [pool-1-thread-8] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2025-03-04 02:32:22,407] [pool-1-thread-8] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2025-03-04 02:32:30,053] [pool-1-thread-8] Initializing /data/josh/2101to600e.stk: [testng] [2025-03-04 02:33:00,545] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR1D_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-03-04 02:33:15,868] [pool-1-thread-8] Initializing 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[pool-1-thread-3] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2025-03-04 02:42:49,648] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2025-03-04 02:42:51,854] [pool-1-thread-3] Initializing /data/qa-16915/m-04.tif: [testng] [2025-03-04 02:42:59,466] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1F_ISOto5HT_35mm/Dish2_w1FRET_t1.TIF: [testng] [2025-03-04 02:43:12,400] [pool-1-thread-2] Initializing /data/cumol-test-series/23.001: [testng] [2025-03-04 02:43:48,974] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2025-03-04 02:43:50,596] [pool-1-thread-2] Used files list does not include base file [testng] [2025-03-04 02:43:58,305] [pool-1-thread-11] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1E_ISOto5HT_35mm/Dish2_w1FRET_t1.TIF: [testng] [2025-03-04 02:44:35,593] [pool-1-thread-2] 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[pool-1-thread-3] Used files list does not include base file [testng] [2025-03-04 02:48:14,685] [pool-1-thread-12] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_Vec_ISOto5HT_35mmdish/5HT/Dish1_w1FRET_t1.TIF: [testng] [2025-03-04 02:48:17,277] [pool-1-thread-10] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_Vec_ISOto5HT_35mm/Dish1_w1FRET_t1.TIF: [testng] [2025-03-04 02:48:20,299] [pool-1-thread-2] Initializing /data/samples/zseries.stk: [testng] [2025-03-04 02:48:22,499] [pool-1-thread-3] Initializing /data/qa-16915/m-04-488.tif: [testng] [2025-03-04 02:48:23,804] [pool-1-thread-11] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2025-03-04 02:48:25,493] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2025-03-04 02:48:32,093] [pool-1-thread-3] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2025-03-04 02:48:36,653] [pool-1-thread-11] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2025-03-04 02:48:39,245] [pool-1-thread-3] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2025-03-04 02:48:43,959] [pool-1-thread-3] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2025-03-04 02:48:48,859] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2025-03-04 02:48:49,805] [pool-1-thread-3] Used files list does not include base file [testng] [2025-03-04 02:48:49,828] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2025-03-04 02:48:50,649] [pool-1-thread-11] Used files list does not include base file [testng] [2025-03-04 02:48:50,650] [pool-1-thread-2] Initializing /data/ascb/C1 Stack.stk: [testng] [2025-03-04 02:48:55,734] [pool-1-thread-2] Initializing /data/josh/2101to800.stk: [testng] [2025-03-04 02:49:07,392] [pool-1-thread-1] Initializing 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02:57:32,639] [pool-1-thread-9] Initializing /data/ascb/mt mklp1.tif: [testng] [2025-03-04 02:57:37,746] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2025-03-04 02:57:44,686] [pool-1-thread-9] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-03-04 02:57:55,742] [pool-1-thread-11] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2025-03-04 02:58:01,733] [pool-1-thread-11] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2025-03-04 02:58:12,934] [pool-1-thread-11] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_4well/Dish1(ISO200nM)_w1FRET_s1_t1.TIF: [testng] [2025-03-04 02:58:18,561] [pool-1-thread-3] Initializing /data/aaron/metamorph.stk: [testng] [2025-03-04 02:58:23,027] [pool-1-thread-3] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2025-03-04 02:58:25,579] [pool-1-thread-7] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2025-03-04 02:58:32,049] [pool-1-thread-7] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2025-03-04 02:58:33,197] [pool-1-thread-3] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2025-03-04 02:58:38,196] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211123_HTR1B_ISOto5HT_4well/Dish2_w1FRET_s1_t1.TIF: [testng] [2025-03-04 02:58:44,058] [pool-1-thread-1] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2025-03-04 02:58:45,319] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_35mmdish/Dish3_w1FRET_t1.TIF: [testng] [2025-03-04 02:58:54,131] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2025-03-04 02:58:56,629] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2025-03-04 03:02:46,927] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2025-03-04 03:02:57,064] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_Vec_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-03-04 03:03:01,633] [pool-1-thread-9] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2025-03-04 03:03:22,315] [pool-1-thread-9] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_HTR1F_ISOto5HT_4well/Dish5_w1FRET_s1_t1.TIF: [testng] [2025-03-04 03:03:41,385] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2025-03-04 03:03:48,927] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR5_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-03-04 03:05:15,381] [pool-1-thread-1] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2025-03-04 03:06:20,392] [pool-1-thread-2] Initializing /data/josh/2101to400astk.stk: [testng] [2025-03-04 03:07:21,143] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_Vec_ISOtoDA_4well/Dish5_w1FRET_s1_t1.TIF: [testng] [2025-03-04 03:07:49,277] [pool-1-thread-2] Initializing /data/samples/10xcalib.stk: [testng] [2025-03-04 03:07:56,014] [pool-1-thread-2] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2025-03-04 03:08:02,919] [pool-1-thread-2] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2025-03-04 03:08:09,704] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2025-03-04 03:08:16,822] [pool-1-thread-2] Initializing /data/ascb/C9 Stack.tif: [testng] [2025-03-04 03:08:20,489] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2025-03-04 03:08:25,346] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2025-03-04 03:08:29,157] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2025-03-04 03:08:32,615] [pool-1-thread-2] Initializing /data/ascb/mt aim.tif: [testng] [2025-03-04 03:08:38,686] [pool-1-thread-3] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2025-03-04 03:08:41,856] [pool-1-thread-2] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2025-03-04 03:08:46,514] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2025-03-04 03:08:55,548] [pool-1-thread-3] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2025-03-04 03:09:18,834] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_4well/Dish8_w1FRET_s1_t1.TIF: [testng] [2025-03-04 03:09:30,437] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2025-03-04 03:09:40,593] [pool-1-thread-2] Initializing /data/samples/diatoms3d.stk: [testng] [2025-03-04 03:09:47,992] [pool-1-thread-2] Initializing /data/graham/G_Wright raw.stk: [testng] [2025-03-04 03:09:56,010] [pool-1-thread-2] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2025-03-04 03:10:15,770] [pool-1-thread-2] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2025-03-04 03:10:24,897] [pool-1-thread-2] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2025-03-04 03:10:48,260] [pool-1-thread-1] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2025-03-04 03:10:57,725] [pool-1-thread-1] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_Vec_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-03-04 03:11:54,812] [pool-1-thread-10] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2025-03-04 03:12:16,275] [pool-1-thread-10] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2025-03-04 03:12:28,084] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2025-03-04 03:12:44,737] [pool-1-thread-2] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2025-03-04 03:13:09,716] [pool-1-thread-10] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR1D_ISOto5HT_35mmdish/Dish3_w1FRET_t1.TIF: [testng] [2025-03-04 03:13:16,359] [pool-1-thread-2] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2025-03-04 03:13:42,245] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211123_HTR1A_ISOto5HT_4well/Dish1_w1FRET_s1_t1.TIF: [testng] [2025-03-04 03:17:16,548] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2025-03-04 03:17:23,916] [pool-1-thread-1] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_HTR1F_ISOto5HT_4well/Dish6_w1FRET_s1_t1.TIF: [testng] 04:43:56,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:43:56,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:43:56,700 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-04_04-43-56.log] [testng] 04:43:56,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b14e6b0 - End of configuration. [testng] 04:46:08,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:46:08,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:46:08,069 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-04_04-46-08.log] [testng] 04:46:08,070 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17463a77 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 13833, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 179 minutes 38 seconds Finished: SUCCESS