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Started by upstream project "BIOFORMATS-test-repo" build number 364 originally caused by: Started by upstream project "Trigger" build number 390 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins2638838882865102154.sh + '[' ivision = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58118_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 04:23:22,961 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 04:23:22,962 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 04:23:22,962 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:23:22,963 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:23:22,964 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:23:22,964 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:23:22,964 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:23:22,964 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:23:22,965 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:23:22,965 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:23:22,966 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:23:22,966 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:23:23,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:23:23,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:23:23,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:23:23,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:23:23,164 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:23:23,164 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:23:23,165 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:23:23,165 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:23:23,165 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 04:23:23,166 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 04:23:23,166 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 201 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-04 04:23:23,175] [main] java.version = 11.0.16 [testng] 04:23:23,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:23:23,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:23,221 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-04_04-23-23.log] [testng] 04:23:23,223 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-04 04:23:23,225] [main] testng.directory = /data [testng] [2025-03-04 04:23:23,225] [main] testng.configDirectory = /config [testng] [2025-03-04 04:23:23,235] [main] testng.multiplier = 1.0 [testng] [2025-03-04 04:23:23,237] [main] testng.in-memory = false [testng] [2025-03-04 04:23:23,237] [main] testng.allow-missing = false [testng] [2025-03-04 04:23:23,237] [main] user.language = en [testng] [2025-03-04 04:23:23,237] [main] user.country = ${user.country} [testng] [2025-03-04 04:23:23,237] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-04 04:23:27,073] [main] ---------------------------------------- [testng] [2025-03-04 04:23:27,073] [main] Total files: 17 [testng] [2025-03-04 04:23:27,073] [main] Scan time: 3.836 s (225 ms/file) [testng] [2025-03-04 04:23:27,074] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 17 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-04 04:23:31,716] [pool-1-thread-1] Initializing /data/christopher/Color48 Copy.ipm: [testng] 04:23:31,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:23:31,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:31,719 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-04_04-23-31.log] [testng] 04:23:31,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@483b93aa - End of configuration. [testng] [2025-03-04 04:23:31,950] [pool-1-thread-12] Initializing /data/jcb/200810162/wt BA plus bio.ipm: [testng] 04:23:31,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:23:31,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:31,953 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-04_04-23-31.log] [testng] 04:23:31,953 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bdbd907 - End of configuration. [testng] [2025-03-04 04:23:32,180] [pool-1-thread-11] Initializing /data/samples/16bit 320x256x1.ipm: [testng] 04:23:32,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:23:32,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:32,181 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-04_04-23-32.log] [testng] 04:23:32,182 |-INFO in ch.qos.logback.core.sift.SiftProcessor@333a499c - End of configuration. [testng] [2025-03-04 04:23:32,388] [pool-1-thread-10] Initializing /data/samples/16-bit 320x256x3.ipm: [testng] 04:23:32,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:23:32,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:32,389 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-04_04-23-32.log] [testng] 04:23:32,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73d25ccc - End of configuration. [testng] [2025-03-04 04:23:32,610] [pool-1-thread-9] Initializing /data/samples/48bit 150x100x3.ipm: [testng] 04:23:32,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:23:32,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:32,611 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-04_04-23-32.log] [testng] 04:23:32,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2327038d - End of configuration. [testng] [2025-03-04 04:23:32,830] [pool-1-thread-8] Initializing /data/samples/08Bit 320x256xthree.ipm: [testng] 04:23:32,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:23:32,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:32,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-04_04-23-32.log] [testng] 04:23:32,831 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29a6e9bd - End of configuration. [testng] [2025-03-04 04:23:33,021] [pool-1-thread-7] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center: [testng] 04:23:33,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:23:33,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:33,022 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-04_04-23-33.log] [testng] 04:23:33,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a6b0ec3 - End of configuration. [testng] [2025-03-04 04:23:33,206] [pool-1-thread-6] Initializing /data/jcb/200810162/mut BA no bio.ipm: [testng] 04:23:33,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:23:33,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:33,208 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-04_04-23-33.log] [testng] 04:23:33,208 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16e5ae62 - End of configuration. [testng] [2025-03-04 04:23:33,434] [pool-1-thread-5] Initializing /data/jcb/200810162/mutBA plus bio.ipm: [testng] 04:23:33,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:23:33,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:33,435 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-04_04-23-33.log] [testng] 04:23:33,435 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5db12f62 - End of configuration. [testng] [2025-03-04 04:23:33,647] [pool-1-thread-4] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm: [testng] 04:23:33,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:23:33,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:33,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-04_04-23-33.log] [testng] 04:23:33,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f9e475e - End of configuration. [testng] [2025-03-04 04:23:33,845] [pool-1-thread-3] Initializing /data/nigel/CD48_75_24hrColor.ipm: [testng] 04:23:33,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:23:33,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:33,846 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-04_04-23-33.log] [testng] 04:23:33,846 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a5df8e1 - End of configuration. [testng] [2025-03-04 04:23:34,076] [pool-1-thread-2] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm: [testng] 04:23:34,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:23:34,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:34,077 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-04_04-23-34.log] [testng] 04:23:34,077 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a9073e7 - End of configuration. [testng] [2025-03-04 04:23:37,910] [pool-1-thread-9] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm: [testng] [2025-03-04 04:23:38,136] [pool-1-thread-10] Initializing /data/samples/24bit 300x200x3.ipm: [testng] [2025-03-04 04:23:38,325] [pool-1-thread-11] Initializing /data/samples/08Bit 320x256x1.ipm: [testng] [2025-03-04 04:23:38,535] [pool-1-thread-8] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm: [testng] [2025-03-04 04:23:38,823] [pool-1-thread-3] Initializing /data/jcb/200810162/wt ba no bio.ipm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 901, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 23 seconds Finished: SUCCESS