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Started by upstream project "BIOFORMATS-test-repo" build number 365 originally caused by: Started by upstream project "Trigger" build number 391 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins2490023622284231975.sh + '[' lim = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58143_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:22:51,390 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:22:51,391 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 00:22:51,391 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:51,392 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:51,392 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:22:51,393 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:22:51,393 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:22:51,393 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:51,393 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:51,394 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:22:51,394 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:22:51,395 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:22:51,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:22:51,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:22:51,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:22:51,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:22:51,582 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:22:51,582 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:22:51,582 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:22:51,583 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:22:51,583 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 00:22:51,584 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 00:22:51,584 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 191 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-05 00:22:51,593] [main] java.version = 17.0.2 [testng] 00:22:51,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:22:51,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:51,636 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-05_00-22-51.log] [testng] 00:22:51,637 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-05 00:22:51,639] [main] testng.directory = /data [testng] [2025-03-05 00:22:51,640] [main] testng.configDirectory = /config [testng] [2025-03-05 00:22:51,648] [main] testng.multiplier = 1.0 [testng] [2025-03-05 00:22:51,649] [main] testng.in-memory = false [testng] [2025-03-05 00:22:51,649] [main] testng.allow-missing = false [testng] [2025-03-05 00:22:51,649] [main] user.language = en [testng] [2025-03-05 00:22:51,649] [main] user.country = ${user.country} [testng] [2025-03-05 00:22:51,649] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-05 00:22:52,085] [main] ---------------------------------------- [testng] [2025-03-05 00:22:52,085] [main] Total files: 21 [testng] [2025-03-05 00:22:52,085] [main] Scan time: 0.436 s (20 ms/file) [testng] [2025-03-05 00:22:52,085] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-05 00:22:58,491] [pool-1-thread-1] Initializing /data/venu/Kontrolle0003.lim: [testng] 00:22:58,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:22:58,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:58,493 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-05_00-22-58.log] [testng] 00:22:58,493 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ccfed85 - End of configuration. [testng] [2025-03-05 00:22:58,830] [pool-1-thread-12] Initializing /data/venu/Kontrolle0005.lim: [testng] 00:22:58,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:22:58,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:58,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-05_00-22-58.log] [testng] 00:22:58,832 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5604c27e - End of configuration. [testng] [2025-03-05 00:22:59,119] [pool-1-thread-11] Initializing /data/venu/Kontrolle0004.lim: [testng] 00:22:59,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:22:59,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:59,120 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-05_00-22-59.log] [testng] 00:22:59,120 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a36e5f8 - End of configuration. [testng] [2025-03-05 00:22:59,380] [pool-1-thread-10] Initializing /data/venu/Kontrolle0002.lim: [testng] 00:22:59,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:22:59,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:59,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-05_00-22-59.log] [testng] 00:22:59,381 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25b88d92 - End of configuration. [testng] [2025-03-05 00:22:59,683] [pool-1-thread-9] Initializing /data/venu/Kontrolle0018.lim: [testng] 00:22:59,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:22:59,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:59,686 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-05_00-22-59.log] [testng] 00:22:59,686 |-INFO in ch.qos.logback.core.sift.SiftProcessor@171003fe - End of configuration. [testng] [2025-03-05 00:22:59,986] [pool-1-thread-8] Initializing /data/venu/Kontrolle0011.lim: [testng] 00:22:59,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:22:59,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:59,987 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-05_00-22-59.log] [testng] 00:22:59,987 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ba85533 - End of configuration. [testng] [2025-03-05 00:23:00,288] [pool-1-thread-7] Initializing /data/venu/Kontrolle0009.lim: [testng] 00:23:00,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:23:00,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:00,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-05_00-23-00.log] [testng] 00:23:00,290 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e4b1267 - End of configuration. [testng] [2025-03-05 00:23:00,583] [pool-1-thread-6] Initializing /data/venu/Kontrolle0001.lim: [testng] 00:23:00,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:23:00,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:00,584 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-05_00-23-00.log] [testng] 00:23:00,584 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3aa4df47 - End of configuration. [testng] [2025-03-05 00:23:00,837] [pool-1-thread-5] Initializing /data/venu/Kontrolle0020.lim: [testng] 00:23:00,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:23:00,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:00,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-05_00-23-00.log] [testng] 00:23:00,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b12ea97 - End of configuration. [testng] [2025-03-05 00:23:01,154] [pool-1-thread-4] Initializing /data/venu/Kontrolle0019.lim: [testng] 00:23:01,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:23:01,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:01,155 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-05_00-23-01.log] [testng] 00:23:01,156 |-INFO in ch.qos.logback.core.sift.SiftProcessor@365b870d - End of configuration. [testng] [2025-03-05 00:23:01,530] [pool-1-thread-3] Initializing /data/venu/Kontrolle0012.lim: [testng] 00:23:01,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:23:01,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:01,531 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-05_00-23-01.log] [testng] 00:23:01,532 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f115d20 - End of configuration. [testng] [2025-03-05 00:23:01,903] [pool-1-thread-2] Initializing /data/venu/Kontrolle0017.lim: [testng] 00:23:01,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:23:01,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:01,904 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-05_00-23-01.log] [testng] 00:23:01,905 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69b41ea6 - End of configuration. [testng] [2025-03-05 00:23:07,174] [pool-1-thread-7] Initializing /data/venu/Kontrolle0016.lim: [testng] [2025-03-05 00:23:07,545] [pool-1-thread-4] Initializing /data/venu/Kontrolle0010.lim: [testng] [2025-03-05 00:23:07,927] [pool-1-thread-2] Initializing /data/venu/Kontrolle0021.lim: [testng] [2025-03-05 00:23:08,300] [pool-1-thread-10] Initializing /data/venu/Kontrolle0007.lim: [testng] [2025-03-05 00:23:08,671] [pool-1-thread-12] Initializing /data/venu/Kontrolle0013.lim: [testng] [2025-03-05 00:23:09,064] [pool-1-thread-6] Initializing /data/venu/Kontrolle0008.lim: [testng] [2025-03-05 00:23:09,391] [pool-1-thread-3] Initializing /data/venu/Kontrolle0015.lim: [testng] [2025-03-05 00:23:09,655] [pool-1-thread-1] Initializing /data/venu/Kontrolle0014.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 25 seconds Finished: SUCCESS