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Started by upstream project "BIOFORMATS-test-repo" build number 365 originally caused by: Started by upstream project "Trigger" build number 391 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins17485215286827804203.sh + '[' targa = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58166_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:38:07,918 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:38:07,919 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 00:38:07,919 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:38:07,920 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:38:07,921 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:38:07,921 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:38:07,921 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:38:07,921 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:38:07,922 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:38:07,922 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:38:07,922 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:38:07,923 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:38:08,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:38:08,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:38:08,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:38:08,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:38:08,108 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:38:08,108 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:38:08,109 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:38:08,109 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:38:08,109 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 00:38:08,110 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 00:38:08,110 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-05 00:38:08,119] [main] java.version = 17.0.2 [testng] 00:38:08,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:38:08,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:08,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-05_00-38-08.log] [testng] 00:38:08,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-05 00:38:08,164] [main] testng.directory = /data [testng] [2025-03-05 00:38:08,164] [main] testng.configDirectory = /config [testng] [2025-03-05 00:38:08,172] [main] testng.multiplier = 1.0 [testng] [2025-03-05 00:38:08,173] [main] testng.in-memory = false [testng] [2025-03-05 00:38:08,173] [main] testng.allow-missing = false [testng] [2025-03-05 00:38:08,173] [main] user.language = en [testng] [2025-03-05 00:38:08,173] [main] user.country = ${user.country} [testng] [2025-03-05 00:38:08,173] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-05 00:38:08,651] [main] ---------------------------------------- [testng] [2025-03-05 00:38:08,651] [main] Total files: 21 [testng] [2025-03-05 00:38:08,651] [main] Scan time: 0.477 s (22 ms/file) [testng] [2025-03-05 00:38:08,651] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-05 00:38:16,014] [pool-1-thread-1] Initializing /data/samples/UCM8.TGA: [testng] 00:38:16,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:38:16,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:16,017 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-05_00-38-16.log] [testng] 00:38:16,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51514721 - End of configuration. [testng] [2025-03-05 00:38:16,440] [pool-1-thread-12] Initializing /data/samples/UBW8.TGA: [testng] 00:38:16,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:38:16,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:16,441 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-05_00-38-16.log] [testng] 00:38:16,442 |-INFO in ch.qos.logback.core.sift.SiftProcessor@443be920 - End of configuration. [testng] [2025-03-05 00:38:16,865] [pool-1-thread-11] Initializing /data/samples/CTC24.TGA: [testng] 00:38:16,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:38:16,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:16,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-05_00-38-16.log] [testng] 00:38:16,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e68f080 - End of configuration. [testng] [2025-03-05 00:38:17,257] [pool-1-thread-10] Initializing /data/samples/XING_B32.TGA: [testng] 00:38:17,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:38:17,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:17,258 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-05_00-38-17.log] [testng] 00:38:17,259 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40cd0145 - End of configuration. [testng] [2025-03-05 00:38:17,638] [pool-1-thread-9] Initializing /data/samples/MARBLES.TGA: [testng] 00:38:17,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:38:17,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:17,639 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-05_00-38-17.log] [testng] 00:38:17,640 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e81467b - End of configuration. [testng] [2025-03-05 00:38:18,016] [pool-1-thread-8] Initializing /data/samples/FLAG_T32.TGA: [testng] 00:38:18,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:38:18,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:18,017 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-05_00-38-18.log] [testng] 00:38:18,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4635a024 - End of configuration. [testng] [2025-03-05 00:38:18,342] [pool-1-thread-7] Initializing /data/samples/UTC24.TGA: [testng] 00:38:18,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:38:18,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:18,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-05_00-38-18.log] [testng] 00:38:18,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bcf4d5a - End of configuration. [testng] [2025-03-05 00:38:18,610] [pool-1-thread-6] Initializing /data/samples/CBW8.TGA: [testng] 00:38:18,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:38:18,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:18,612 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-05_00-38-18.log] [testng] 00:38:18,612 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e8e6e1d - End of configuration. [testng] [2025-03-05 00:38:18,869] [pool-1-thread-5] Initializing /data/samples/XING_T32.TGA: [testng] 00:38:18,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:38:18,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:18,870 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-05_00-38-18.log] [testng] 00:38:18,871 |-INFO in ch.qos.logback.core.sift.SiftProcessor@685fc38c - End of configuration. [testng] [2025-03-05 00:38:19,134] [pool-1-thread-4] Initializing /data/samples/FLAG_B16.TGA: [testng] 00:38:19,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:38:19,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:19,135 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-05_00-38-19.log] [testng] 00:38:19,135 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75d551e9 - End of configuration. [testng] [2025-03-05 00:38:19,491] [pool-1-thread-3] Initializing /data/samples/XING_B24.TGA: [testng] 00:38:19,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:38:19,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:19,492 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-05_00-38-19.log] [testng] 00:38:19,493 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d0fff1 - End of configuration. [testng] [2025-03-05 00:38:19,825] [pool-1-thread-2] Initializing /data/samples/XING_T16.TGA: [testng] 00:38:19,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:38:19,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:19,826 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-05_00-38-19.log] [testng] 00:38:19,826 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ef384dd - End of configuration. [testng] [2025-03-05 00:38:25,121] [pool-1-thread-4] Initializing /data/samples/CTC16.TGA: [testng] [2025-03-05 00:38:25,498] [pool-1-thread-12] Initializing /data/samples/UTC16.TGA: [testng] [2025-03-05 00:38:25,804] [pool-1-thread-6] Initializing /data/samples/CCM8.TGA: [testng] [2025-03-05 00:38:26,085] [pool-1-thread-1] Initializing /data/samples/FLAG_B24.TGA: [testng] [2025-03-05 00:38:26,358] [pool-1-thread-8] Initializing /data/samples/XING_B16.TGA: [testng] [2025-03-05 00:38:26,653] [pool-1-thread-2] Initializing /data/samples/UTC32.TGA: [testng] [2025-03-05 00:38:26,938] [pool-1-thread-3] Initializing /data/samples/FLAG_T16.TGA: [testng] [2025-03-05 00:38:27,210] [pool-1-thread-5] Initializing /data/samples/FLAG_B32.TGA: [testng] [2025-03-05 00:38:27,468] [pool-1-thread-10] Initializing /data/samples/XING_T24.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 26 seconds Finished: SUCCESS