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Started by upstream project "BIOFORMATS-test-repo" build number 365
originally caused by:
 Started by upstream project "Trigger" build number 391
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins2785389666231596348.sh
+ '[' minc = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_58200_merge_ci -v /uod/idr/repos/curated/minc:/data -v /uod/idr-scratch/merge-ci/curated/minc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:37:33,702 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
   [testng] 01:37:33,704 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service.
   [testng] 01:37:33,704 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:37:33,704 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:37:33,705 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:37:33,705 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:37:33,705 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:37:33,705 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:37:33,706 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:37:33,706 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:37:33,707 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:37:33,707 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:37:33,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:37:33,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:37:33,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:37:33,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:37:33,892 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:37:33,892 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:37:33,892 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:37:33,893 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:37:33,893 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration.
   [testng] 01:37:33,894 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point
   [testng] 01:37:33,894 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2025-03-05 01:37:33,902] [main] java.version = 17.0.2
   [testng] 01:37:33,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:37:33,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:33,945 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-05_01-37-33.log]
   [testng] 01:37:33,946 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration.
   [testng] [2025-03-05 01:37:33,948] [main] testng.directory = /data
   [testng] [2025-03-05 01:37:33,948] [main] testng.configDirectory = /config
   [testng] [2025-03-05 01:37:33,957] [main] testng.multiplier = 1.0
   [testng] [2025-03-05 01:37:33,957] [main] testng.in-memory = false
   [testng] [2025-03-05 01:37:33,957] [main] testng.allow-missing = false
   [testng] [2025-03-05 01:37:33,957] [main] user.language = en
   [testng] [2025-03-05 01:37:33,958] [main] user.country = ${user.country}
   [testng] [2025-03-05 01:37:33,958] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2025-03-05 01:37:34,585] [main] ----------------------------------------
   [testng] [2025-03-05 01:37:34,585] [main] Total files: 15
   [testng] [2025-03-05 01:37:34,585] [main] Scan time: 0.627 s (41 ms/file)
   [testng] [2025-03-05 01:37:34,585] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2025-03-05 01:37:48,959] [pool-1-thread-1] Initializing /data/samples/ICBM/icbm_template_zero.75mm.mnc: 
   [testng] 01:37:48,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:37:48,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:48,961 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-05_01-37-48.log]
   [testng] 01:37:48,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13de5071 - End of configuration.
   [testng] [2025-03-05 01:37:49,429] [pool-1-thread-12] Initializing /data/samples/ICBM/icbm_template_2.00mm.mnc: 
   [testng] 01:37:49,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:37:49,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:49,431 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-05_01-37-49.log]
   [testng] 01:37:49,431 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d274ac7 - End of configuration.
   [testng] [2025-03-05 01:37:49,844] [pool-1-thread-11] Initializing /data/qa-17215/IBSR01.mnc: 
   [testng] 01:37:49,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:37:49,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:49,845 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-05_01-37-49.log]
   [testng] 01:37:49,846 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3eb02dca - End of configuration.
   [testng] [2025-03-05 01:37:50,510] [pool-1-thread-10] Initializing /data/daren/test_32bit_float.mnc: 
   [testng] 01:37:50,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:37:50,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:50,511 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-05_01-37-50.log]
   [testng] 01:37:50,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a9e4cf9 - End of configuration.
   [testng] [2025-03-05 01:37:51,319] [pool-1-thread-9] Initializing /data/samples/ICBM/icbm_template_one.50mm.mnc: 
   [testng] 01:37:51,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:37:51,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:51,320 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-05_01-37-51.log]
   [testng] 01:37:51,321 |-INFO in ch.qos.logback.core.sift.SiftProcessor@325a0d52 - End of configuration.
   [testng] [2025-03-05 01:37:51,751] [pool-1-thread-8] Initializing /data/samples/ICBM/icbm_template_3.00mm.mnc: 
   [testng] 01:37:51,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:37:51,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:51,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-05_01-37-51.log]
   [testng] 01:37:51,754 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c2cbe72 - End of configuration.
   [testng] [2025-03-05 01:37:52,182] [pool-1-thread-7] Initializing /data/bigbrain/full16_400um_2009b_sym.mnc: 
   [testng] 01:37:52,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:37:52,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:52,183 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-05_01-37-52.log]
   [testng] 01:37:52,183 |-INFO in ch.qos.logback.core.sift.SiftProcessor@170eea2c - End of configuration.
   [testng] [2025-03-05 01:37:55,268] [pool-1-thread-6] Initializing /data/samples/ICBM/icbm_template_one.00mm.mnc: 
   [testng] 01:37:55,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:37:55,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:55,269 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-05_01-37-55.log]
   [testng] 01:37:55,270 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ba1cd08 - End of configuration.
   [testng] [2025-03-05 01:37:55,721] [pool-1-thread-5] Initializing /data/samples/ICBM/icbm_template_6.00mm.mnc: 
   [testng] 01:37:55,721 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:37:55,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:55,722 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-05_01-37-55.log]
   [testng] 01:37:55,723 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60d71e8f - End of configuration.
   [testng] [2025-03-05 01:37:56,132] [pool-1-thread-4] Initializing /data/bigbrain/pm6479o.mnc: 
   [testng] 01:37:56,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:37:56,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:56,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-05_01-37-56.log]
   [testng] 01:37:56,133 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f75e12f - End of configuration.
   [testng] [2025-03-05 01:37:57,077] [pool-1-thread-3] Initializing /data/bigbrain/8-bit_full_400um_2009b_sym.mnc: 
   [testng] 01:37:57,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:37:57,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:57,077 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-05_01-37-57.log]
   [testng] 01:37:57,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@96b7738 - End of configuration.
   [testng] [2025-03-05 01:37:58,318] [pool-1-thread-2] Initializing /data/samples/ICBM/icbm_template_zero.50mm.mnc: 
   [testng] 01:37:58,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:37:58,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:58,319 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-05_01-37-58.log]
   [testng] 01:37:58,319 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ac9c430 - End of configuration.

BUILD SUCCESSFUL
Total time: 50 seconds
Finished: SUCCESS