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Started by upstream project "BIOFORMATS-test-repo" build number 365 originally caused by: Started by upstream project "Trigger" build number 391 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins16767860338342364254.sh + '[' psd = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58261_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 05:01:00,374 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 05:01:00,375 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 05:01:00,375 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:01:00,376 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:01:00,376 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:01:00,377 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:01:00,377 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:01:00,377 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:01:00,377 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:01:00,378 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:01:00,378 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:01:00,378 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:01:00,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:01:00,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:01:00,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:01:00,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:01:00,655 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:01:00,655 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:01:00,655 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:01:00,656 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:01:00,656 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 05:01:00,656 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 05:01:00,656 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 279 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-05 05:01:00,665] [main] java.version = 17.0.2 [testng] 05:01:00,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:01:00,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:00,709 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-05_05-01-00.log] [testng] 05:01:00,710 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-05 05:01:00,712] [main] testng.directory = /data [testng] [2025-03-05 05:01:00,713] [main] testng.configDirectory = /config [testng] [2025-03-05 05:01:00,721] [main] testng.multiplier = 1.0 [testng] [2025-03-05 05:01:00,721] [main] testng.in-memory = false [testng] [2025-03-05 05:01:00,721] [main] testng.allow-missing = false [testng] [2025-03-05 05:01:00,721] [main] user.language = en [testng] [2025-03-05 05:01:00,722] [main] user.country = ${user.country} [testng] [2025-03-05 05:01:00,722] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-05 05:01:01,949] [main] ---------------------------------------- [testng] [2025-03-05 05:01:01,949] [main] Total files: 18 [testng] [2025-03-05 05:01:01,949] [main] Scan time: 1.227 s (68 ms/file) [testng] [2025-03-05 05:01:01,949] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-05 05:01:14,717] [pool-1-thread-1] Initializing /data/ascb/607x.psd: [testng] 05:01:14,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:01:14,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:14,719 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-05_05-01-14.log] [testng] 05:01:14,719 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12fe6350 - End of configuration. [testng] [2025-03-05 05:01:15,284] [pool-1-thread-12] Initializing /data/misc/vig_drawing_1.psd: [testng] 05:01:15,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:01:15,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:15,286 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-05_05-01-15.log] [testng] 05:01:15,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53b9df8c - End of configuration. [testng] [2025-03-05 05:01:15,916] [pool-1-thread-11] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 05:01:15,916 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:01:15,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:15,917 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-05_05-01-15.log] [testng] 05:01:15,918 |-INFO in ch.qos.logback.core.sift.SiftProcessor@339178a8 - End of configuration. [testng] [2025-03-05 05:01:16,466] [pool-1-thread-10] Initializing /data/misc/venus_composite_8bit.psd: [testng] 05:01:16,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:01:16,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:16,467 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-05_05-01-16.log] [testng] 05:01:16,468 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50c2cd4d - End of configuration. [testng] [2025-03-05 05:01:17,001] [pool-1-thread-9] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 05:01:17,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:01:17,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:17,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-05_05-01-17.log] [testng] 05:01:17,002 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bcd21ea - End of configuration. [testng] [2025-03-05 05:01:17,499] [pool-1-thread-8] Initializing /data/misc/venus_composite.psd: [testng] 05:01:17,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:01:17,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:17,500 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-05_05-01-17.log] [testng] 05:01:17,500 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cb46752 - End of configuration. [testng] [2025-03-05 05:01:18,009] [pool-1-thread-7] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] 05:01:18,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:01:18,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:18,010 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-05_05-01-18.log] [testng] 05:01:18,011 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ed0a8d4 - End of configuration. [testng] [2025-03-05 05:01:18,649] [pool-1-thread-6] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 05:01:18,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:01:18,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:18,650 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-05_05-01-18.log] [testng] 05:01:18,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73b15c26 - End of configuration. [testng] [2025-03-05 05:01:19,188] [pool-1-thread-5] Initializing /data/big-images/8kx8k.psd: [testng] 05:01:19,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:01:19,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:19,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-05_05-01-19.log] [testng] 05:01:19,190 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bf14b73 - End of configuration. [testng] [2025-03-05 05:01:19,682] [pool-1-thread-4] Initializing /data/ascb/423.psd: [testng] 05:01:19,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:01:19,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:19,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-05_05-01-19.log] [testng] 05:01:19,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f4606a3 - End of configuration. [testng] [2025-03-05 05:01:20,316] [pool-1-thread-3] Initializing /data/misc/glossy_orbs.psd: [testng] 05:01:20,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:01:20,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:20,317 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-05_05-01-20.log] [testng] 05:01:20,318 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ceece9 - End of configuration. [testng] [2025-03-05 05:01:20,952] [pool-1-thread-2] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 05:01:20,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:01:20,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:20,953 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-05_05-01-20.log] [testng] 05:01:20,953 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72e2cb2a - End of configuration. [testng] [2025-03-05 05:01:27,848] [pool-1-thread-3] Initializing /data/cris/house.tif: [testng] [2025-03-05 05:01:29,692] [pool-1-thread-9] Initializing /data/misc/glossy_buttons.psd: [testng] [2025-03-05 05:01:30,275] [pool-1-thread-8] Initializing /data/qa-4117/caspase gel-1.psd: [testng] [2025-03-05 05:01:30,796] [pool-1-thread-12] Initializing /data/misc/smilie.psd: [testng] [2025-03-05 05:01:31,254] [pool-1-thread-2] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] [2025-03-05 05:01:31,864] [pool-1-thread-7] Initializing /data/simon/colour_separated_image.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 49 seconds Finished: SUCCESS