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Started by upstream project "BIOFORMATS-test-repo" build number 365 originally caused by: Started by upstream project "Trigger" build number 391 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins5062971014634223623.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58284_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 06:32:30,040 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 06:32:30,042 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 06:32:30,042 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:32:30,042 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:32:30,043 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:32:30,043 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:32:30,043 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:32:30,043 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:32:30,044 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:32:30,044 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:32:30,045 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:32:30,045 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:32:30,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:32:30,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:32:30,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:32:30,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:32:30,221 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:32:30,221 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:32:30,221 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:32:30,221 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:32:30,221 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 06:32:30,222 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 06:32:30,222 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 178 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-05 06:32:30,230] [main] java.version = 17.0.2 [testng] 06:32:30,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:32:30,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:32:30,271 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-05_06-32-30.log] [testng] 06:32:30,273 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-05 06:32:30,274] [main] testng.directory = /data [testng] [2025-03-05 06:32:30,275] [main] testng.configDirectory = /config [testng] [2025-03-05 06:32:30,283] [main] testng.multiplier = 1.0 [testng] [2025-03-05 06:32:30,283] [main] testng.in-memory = false [testng] [2025-03-05 06:32:30,283] [main] testng.allow-missing = false [testng] [2025-03-05 06:32:30,283] [main] user.language = en [testng] [2025-03-05 06:32:30,283] [main] user.country = ${user.country} [testng] [2025-03-05 06:32:30,283] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-05 06:33:17,816] [main] ---------------------------------------- [testng] [2025-03-05 06:33:17,817] [main] Total files: 31 [testng] [2025-03-05 06:33:17,817] [main] Scan time: 47.532 s (1533 ms/file) [testng] [2025-03-05 06:33:17,817] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-05 06:37:26,386] [pool-1-thread-1] Initializing /data/venu/Multichannel 3a.jpg: [testng] 06:37:26,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:37:26,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:26,387 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-05_06-37-26.log] [testng] 06:37:26,388 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9ba7047 - End of configuration. [testng] [2025-03-05 06:37:26,799] [pool-1-thread-12] Initializing /data/venu/Multichannel 3.jp2: [testng] 06:37:26,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:37:26,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:26,801 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-05_06-37-26.log] [testng] 06:37:26,802 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20ef942b - End of configuration. [testng] [2025-03-05 06:37:28,647] [pool-1-thread-11] Initializing /data/david/000000_000001.jpx: [testng] 06:37:28,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:37:28,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:28,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-05_06-37-28.log] [testng] 06:37:28,649 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cadedf2 - End of configuration. [testng] [2025-03-05 06:37:30,736] [pool-1-thread-10] Initializing /data/vikram/Captured 3.jp2: [testng] 06:37:30,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:37:30,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:30,738 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-05_06-37-30.log] [testng] 06:37:30,739 |-INFO in ch.qos.logback.core.sift.SiftProcessor@256717f - End of configuration. [testng] [2025-03-05 06:37:32,500] [pool-1-thread-9] Initializing /data/david/C1R1_FOS.jp2: [testng] 06:37:32,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:37:32,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:32,501 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-05_06-37-32.log] [testng] 06:37:32,501 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b15110b - End of configuration. [testng] [2025-03-05 06:37:34,324] [pool-1-thread-8] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] 06:37:34,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:37:34,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:34,325 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-05_06-37-34.log] [testng] 06:37:34,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4971792b - End of configuration. [testng] [2025-03-05 06:37:36,801] [pool-1-thread-7] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] 06:37:36,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:37:36,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:36,802 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-05_06-37-36.log] [testng] 06:37:36,802 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5855541 - End of configuration. [testng] [2025-03-05 06:37:41,038] [pool-1-thread-6] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] 06:37:41,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:37:41,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:41,039 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-05_06-37-41.log] [testng] 06:37:41,040 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a7c893b - End of configuration. [testng] [2025-03-05 06:37:42,953] [pool-1-thread-5] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] 06:37:42,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:37:42,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:42,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-05_06-37-42.log] [testng] 06:37:42,954 |-INFO in ch.qos.logback.core.sift.SiftProcessor@649288c3 - End of configuration. [testng] [2025-03-05 06:37:44,298] [pool-1-thread-4] Initializing /data/vikram/Captured 2.jp2: [testng] 06:37:44,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:37:44,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:44,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-05_06-37-44.log] [testng] 06:37:44,299 |-INFO in ch.qos.logback.core.sift.SiftProcessor@499ff7e9 - End of configuration. [testng] [2025-03-05 06:37:45,942] [pool-1-thread-3] Initializing /data/david/cy5-tph.jp2: [testng] 06:37:45,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:37:45,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:45,943 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-05_06-37-45.log] [testng] 06:37:45,944 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30760d38 - End of configuration. [testng] [2025-03-05 06:37:47,039] [pool-1-thread-2] Initializing /data/vikram/Captured 1.jp2: [testng] 06:37:47,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:37:47,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:47,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-05_06-37-47.log] [testng] 06:37:47,040 |-INFO in ch.qos.logback.core.sift.SiftProcessor@651198ec - End of configuration. [testng] [2025-03-05 06:37:58,516] [pool-1-thread-1] Initializing /data/vikram/Captured 5.jp2: [testng] [2025-03-05 06:38:01,534] [pool-1-thread-2] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2025-03-05 06:38:03,576] [pool-1-thread-10] Initializing /data/big-images/2kx2k.jpf: [testng] [2025-03-05 06:38:05,561] [pool-1-thread-4] Initializing /data/misc/clown-rgb.jbig: [testng] [2025-03-05 06:38:12,491] [pool-1-thread-11] Initializing /data/david/multichannel-2d test.jp2: [testng] [2025-03-05 06:38:14,489] [pool-1-thread-7] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] [2025-03-05 06:38:20,667] [pool-1-thread-12] Initializing /data/frans/flower.jp2: [testng] [2025-03-05 06:38:22,281] [pool-1-thread-8] Initializing /data/big-images/8kx8k.jpf: [testng] [2025-03-05 06:38:24,075] [pool-1-thread-1] Initializing /data/aryeh/flour 12.jp2: [testng] [2025-03-05 06:38:34,635] [pool-1-thread-10] Initializing /data/misc/clown-rgb.jpc: [testng] [2025-03-05 06:38:36,179] [pool-1-thread-4] Initializing /data/misc/clown-rgb.jp2: [testng] [2025-03-05 06:38:37,896] [pool-1-thread-9] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [2025-03-05 06:38:39,897] [pool-1-thread-2] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] [2025-03-05 06:38:41,558] [pool-1-thread-1] Initializing /data/kraig/head.jp2: [testng] [2025-03-05 06:38:45,581] [pool-1-thread-7] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] [2025-03-05 06:38:50,793] [pool-1-thread-12] Initializing /data/vikram/Captured 4.jp2: [testng] [2025-03-05 06:38:52,565] [pool-1-thread-10] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] [2025-03-05 06:44:34,990] [pool-1-thread-4] Initializing /data/big-images/4kx4k.jpf: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 18 minutes 5 seconds Finished: SUCCESS