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Started by upstream project "BIOFORMATS-test-repo" build number 41 originally caused by: Started by upstream project "Trigger" build number 47 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins7416257796354465625.sh + '[' imaris = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_5829_merge_ci -v /uod/idr/repos/curated/imaris:/data -v /uod/idr-scratch/merge-ci/curated/imaris:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:18:24,040 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:18:24,042 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:18:24,042 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:18:24,043 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:18:24,043 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:18:24,043 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:18:24,043 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:18:24,043 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:18:24,044 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:18:24,044 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:18:24,044 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:18:24,044 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:18:24,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:18:24,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:18:24,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:18:24,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:18:24,309 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:18:24,309 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:18:24,309 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:18:24,310 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:18:24,310 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:18:24,311 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:18:24,311 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 267 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-22 02:18:24,321] [main] java.version = 1.8.0_342 [testng] 02:18:24,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:18:24,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:24,374 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-22_02-18-24.log] [testng] 02:18:24,375 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-22 02:18:24,378] [main] testng.directory = /data [testng] [2024-04-22 02:18:24,378] [main] testng.configDirectory = /config [testng] [2024-04-22 02:18:24,396] [main] testng.multiplier = 1.0 [testng] [2024-04-22 02:18:24,396] [main] testng.in-memory = false [testng] [2024-04-22 02:18:24,396] [main] testng.allow-missing = false [testng] [2024-04-22 02:18:24,396] [main] user.language = fr [testng] [2024-04-22 02:18:24,396] [main] user.country = FR [testng] [2024-04-22 02:18:24,396] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-22 02:18:33,444] [main] ---------------------------------------- [testng] [2024-04-22 02:18:33,444] [main] Total files: 67 [testng] [2024-04-22 02:18:33,444] [main] Scan time: 9.047 s (135 ms/file) [testng] [2024-04-22 02:18:33,444] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 59 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-22 02:18:57,908] [pool-1-thread-1] Initializing /data/public/davemason/Convallaria_3C_3T_35Z_confocal_deconvolved_IMS3.ims: [testng] 02:18:57,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:18:57,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:57,910 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-22_02-18-57.log] [testng] 02:18:57,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44cf8fa5 - End of configuration. [testng] [2024-04-22 02:18:57,947] [pool-1-thread-12] Initializing /data/generated/10-31_E_t0000.ims: [testng] 02:18:57,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:18:57,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:57,948 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-22_02-18-57.log] [testng] 02:18:57,948 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ff0e5cc - End of configuration. [testng] [2024-04-22 02:18:57,966] [pool-1-thread-11] Initializing /data/generated/10-31_E_t0005.ims: [testng] 02:18:57,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:18:57,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:57,967 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-22_02-18-57.log] [testng] 02:18:57,967 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d22a919 - End of configuration. [testng] [2024-04-22 02:18:57,978] [pool-1-thread-10] Initializing /data/generated/10-31_E_t0003.ims: [testng] 02:18:57,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:18:57,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:57,979 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-22_02-18-57.log] [testng] 02:18:57,979 |-INFO in ch.qos.logback.core.sift.SiftProcessor@399f4ec0 - End of configuration. [testng] [2024-04-22 02:18:57,990] [pool-1-thread-9] Initializing /data/jcb/fig 6B GFP-AP-2d.ims: [testng] 02:18:57,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:18:57,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:57,991 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-22_02-18-57.log] [testng] 02:18:57,991 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72498d3d - End of configuration. [testng] [2024-04-22 02:18:58,027] [pool-1-thread-8] Initializing /data/generated/mri-stack-original.ims: [testng] 02:18:58,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:18:58,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:58,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-22_02-18-58.log] [testng] 02:18:58,028 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4411cdbb - End of configuration. [testng] [2024-04-22 02:18:58,039] [pool-1-thread-7] Initializing /data/generated/10-31_E_t0015.ims: [testng] 02:18:58,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:18:58,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:58,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-22_02-18-58.log] [testng] 02:18:58,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b535f2 - End of configuration. [testng] [2024-04-22 02:18:58,080] [pool-1-thread-6] Initializing /data/generated/10-31_E_t0009.ims: [testng] 02:18:58,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:18:58,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:58,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-22_02-18-58.log] [testng] 02:18:58,083 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18d681b7 - End of configuration. [testng] [2024-04-22 02:18:58,098] [pool-1-thread-5] Initializing /data/qa-17839/Fusion_2048_2048_50_1_Acquire.ims: [testng] 02:18:58,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:18:58,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:58,099 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-22_02-18-58.log] [testng] 02:18:58,100 |-INFO in ch.qos.logback.core.sift.SiftProcessor@402f46b9 - End of configuration. [testng] [2024-04-22 02:18:58,152] [pool-1-thread-4] Initializing /data/kay/Imaris503_test_Kay.ims: [testng] 02:18:58,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:18:58,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:58,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-22_02-18-58.log] [testng] 02:18:58,153 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1311bce3 - End of configuration. [testng] [2024-04-22 02:18:58,176] [pool-1-thread-3] Initializing /data/oliver/Stack2_u16Bit.ims: [testng] 02:18:58,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:18:58,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:58,177 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-22_02-18-58.log] [testng] 02:18:58,177 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ff2d2b7 - End of configuration. [testng] [2024-04-22 02:18:58,206] [pool-1-thread-2] Initializing /data/oliver/Stack2_float32Bit.ims: [testng] 02:18:58,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:18:58,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:58,207 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-22_02-18-58.log] [testng] 02:18:58,207 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b06caf1 - End of configuration. [testng] [2024-04-22 02:19:00,321] [pool-1-thread-10] Initializing /data/generated/10-31_E_t0012.ims: [testng] [2024-04-22 02:19:00,331] [pool-1-thread-12] Initializing /data/public/davemason/Convallaria_3C_10T_confocal_IMS3.ims: [testng] [2024-04-22 02:19:00,373] [pool-1-thread-6] Initializing /data/public/davemason/TransFactors_2C_SRRF_IMS3.ims: [testng] [2024-04-22 02:19:00,399] [pool-1-thread-8] Initializing /data/jake/p75Cherry M2 010-3~B.ims: [testng] [2024-04-22 02:19:00,430] [pool-1-thread-7] Initializing /data/public/davemason/TransFactors_2C_SRRF.ims: [testng] [2024-04-22 02:19:00,457] [pool-1-thread-11] Initializing /data/generated/10-31_E_t0010.ims: [testng] [2024-04-22 02:19:00,476] [pool-1-thread-4] Initializing /data/generated/10-31_E_t0006.ims: [testng] [2024-04-22 02:19:00,740] [pool-1-thread-3] Initializing /data/qa-8019/wrong_num_dimensions.ims: [testng] [2024-04-22 02:19:01,407] [pool-1-thread-10] Initializing /data/public/davemason/TransFactors_2C_34Z_SRRF_IMS3.ims: [testng] [2024-04-22 02:19:01,446] [pool-1-thread-4] Initializing /data/generated/10-31_E_t0014.ims: [testng] [2024-04-22 02:19:01,518] [pool-1-thread-11] Initializing /data/qa-4898/o383_1_457_CS_r1.ims: [testng] [2024-04-22 02:19:01,989] [pool-1-thread-4] Initializing /data/public/eliana/retina_large.ims: [testng] [2024-04-22 02:19:02,468] [pool-1-thread-1] Initializing /data/jason/imaris_5_5_demoimages/retina.ims: BUILD SUCCESSFUL Total time: 1 minute 44 seconds Finished: SUCCESS