Started by upstream project "BIOFORMATS-test-repo" build number 366 originally caused by: Started by upstream project "Trigger" build number 392 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins13804580249941985760.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58304_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:23:17,863 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:23:17,865 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service. [testng] 00:23:17,865 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:23:17,866 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:23:17,866 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:23:17,866 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:23:17,867 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:23:17,867 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:23:17,867 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:23:17,868 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:23:17,868 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:23:17,868 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:23:18,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:23:18,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:23:18,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:23:18,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:23:18,063 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:23:18,063 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:23:18,064 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:23:18,064 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:23:18,064 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4310d43 - End of configuration. [testng] 00:23:18,065 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1b11171f - Registering current configuration as safe fallback point [testng] 00:23:18,065 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 198 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-06 00:23:18,074] [main] java.version = 21 [testng] 00:23:18,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:23:18,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:18,120 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-06_00-23-18.log] [testng] 00:23:18,121 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration. [testng] [2025-03-06 00:23:18,123] [main] testng.directory = /data [testng] [2025-03-06 00:23:18,123] [main] testng.configDirectory = /config [testng] [2025-03-06 00:23:18,132] [main] testng.multiplier = 1.0 [testng] [2025-03-06 00:23:18,132] [main] testng.in-memory = false [testng] [2025-03-06 00:23:18,133] [main] testng.allow-missing = false [testng] [2025-03-06 00:23:18,133] [main] user.language = en [testng] [2025-03-06 00:23:18,133] [main] user.country = ${user.country} [testng] [2025-03-06 00:23:18,133] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-06 00:23:50,162] [main] ---------------------------------------- [testng] [2025-03-06 00:23:50,162] [main] Total files: 320 [testng] [2025-03-06 00:23:50,162] [main] Scan time: 32.029 s (100 ms/file) [testng] [2025-03-06 00:23:50,163] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 196 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-06 00:35:37,553] [pool-1-thread-1] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] 00:35:37,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:35:37,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:37,555 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-06_00-35-37.log] [testng] 00:35:37,556 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9aef2af - End of configuration. [testng] [2025-03-06 00:35:38,405] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] 00:35:38,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:35:38,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:38,406 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-06_00-35-38.log] [testng] 00:35:38,407 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e0bf920 - End of configuration. [testng] [2025-03-06 00:35:40,215] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] 00:35:40,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:35:40,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:40,217 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-06_00-35-40.log] [testng] 00:35:40,217 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c18cfd6 - End of configuration. [testng] [2025-03-06 00:35:41,223] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] 00:35:41,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:35:41,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:41,224 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-06_00-35-41.log] [testng] 00:35:41,224 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a4c3ca0 - End of configuration. [testng] [2025-03-06 00:35:41,886] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] 00:35:41,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:35:41,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:41,886 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-06_00-35-41.log] [testng] 00:35:41,887 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45662e9b - End of configuration. [testng] [2025-03-06 00:35:42,318] [pool-1-thread-8] Initializing /data/qa-17270/stack1.ome.tif: [testng] 00:35:42,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:35:42,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:42,319 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-06_00-35-42.log] [testng] 00:35:42,320 |-INFO in ch.qos.logback.core.sift.SiftProcessor@182ed6e2 - End of configuration. [testng] [2025-03-06 00:35:42,988] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] 00:35:42,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:35:42,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:42,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-06_00-35-42.log] [testng] 00:35:42,990 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2339e193 - End of configuration. [testng] [2025-03-06 00:35:43,614] [pool-1-thread-6] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] 00:35:43,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:35:43,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:43,615 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-06_00-35-43.log] [testng] 00:35:43,615 |-INFO in ch.qos.logback.core.sift.SiftProcessor@249fa48c - End of configuration. [testng] [2025-03-06 00:35:44,090] [pool-1-thread-5] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] 00:35:44,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:35:44,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:44,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-06_00-35-44.log] [testng] 00:35:44,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@257a8e41 - End of configuration. [testng] [2025-03-06 00:35:44,671] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] 00:35:44,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:35:44,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:44,672 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-06_00-35-44.log] [testng] 00:35:44,672 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32cc429d - End of configuration. [testng] [2025-03-06 00:35:45,646] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] 00:35:45,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:35:45,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:45,647 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-06_00-35-45.log] [testng] 00:35:45,647 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2680c8ab - End of configuration. [testng] [2025-03-06 00:35:46,091] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] 00:35:46,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:35:46,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:46,092 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-06_00-35-46.log] [testng] 00:35:46,092 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c6ca6bb - End of configuration. [testng] [2025-03-06 00:35:53,156] [pool-1-thread-10] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2025-03-06 00:36:45,365] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2025-03-06 00:36:46,164] [pool-1-thread-1] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2025-03-06 00:36:46,738] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2025-03-06 00:36:47,149] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2025-03-06 00:36:47,755] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2025-03-06 00:36:48,390] [pool-1-thread-9] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2025-03-06 00:36:49,054] [pool-1-thread-4] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2025-03-06 00:36:49,666] [pool-1-thread-11] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2025-03-06 00:36:50,096] [pool-1-thread-2] Initializing /data/qa-17335/Clipboard-1.tif: [testng] [2025-03-06 00:36:50,865] [pool-1-thread-6] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2025-03-06 00:36:53,941] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2025-03-06 00:36:55,091] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2025-03-06 00:36:55,865] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2025-03-06 00:36:56,250] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2025-03-06 00:36:57,563] [pool-1-thread-7] Initializing /data/qa-17409/Clipboard.tif: [testng] [2025-03-06 00:36:58,434] [pool-1-thread-2] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2025-03-06 00:36:59,658] [pool-1-thread-4] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2025-03-06 00:37:00,909] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2025-03-06 00:37:01,382] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2025-03-06 00:37:02,147] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2025-03-06 00:37:03,661] [pool-1-thread-8] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2025-03-06 00:37:09,808] [pool-1-thread-2] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2025-03-06 00:37:10,549] [pool-1-thread-1] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2025-03-06 00:37:11,203] [pool-1-thread-7] Initializing /data/public/etienne/venus stack.oir: [testng] [2025-03-06 00:37:11,868] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2025-03-06 00:37:12,695] [pool-1-thread-4] Initializing /data/qa-17331/Clipboard.tif: [testng] [2025-03-06 00:37:15,864] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2025-03-06 00:37:18,118] [pool-1-thread-1] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2025-03-06 00:37:19,844] [pool-1-thread-4] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2025-03-06 00:37:20,496] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2025-03-06 00:37:21,361] [pool-1-thread-3] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2025-03-06 00:37:21,758] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2025-03-06 00:37:25,101] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2025-03-06 00:37:28,880] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2025-03-06 00:37:30,361] [pool-1-thread-5] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] [2025-03-06 00:37:31,340] [pool-1-thread-7] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info: [testng] [2025-03-06 00:37:39,846] [pool-1-thread-2] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2025-03-06 00:37:41,062] [pool-1-thread-1] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2025-03-06 00:37:41,848] [pool-1-thread-11] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2025-03-06 00:37:46,185] [pool-1-thread-2] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2025-03-06 00:37:47,074] [pool-1-thread-4] Initializing /data/public/imagesc-105684/1202-interval_freeRun_sequence_frame.oir: [testng] [2025-03-06 00:37:47,900] [pool-1-thread-1] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2025-03-06 00:37:48,310] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2025-03-06 00:37:49,800] [pool-1-thread-5] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2025-03-06 00:37:52,029] [pool-1-thread-9] Initializing /data/qa-16871/Clipboard.tif: [testng] [2025-03-06 00:37:53,814] [pool-1-thread-11] Initializing /data/olympus/calcium sparks_XYt.vsi: [testng] [2025-03-06 00:37:54,157] [pool-1-thread-2] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2025-03-06 00:37:54,612] [pool-1-thread-1] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2025-03-06 00:37:55,639] [pool-1-thread-3] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.vsi: [testng] [2025-03-06 00:37:57,954] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2025-03-06 00:37:58,428] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2025-03-06 00:37:59,080] [pool-1-thread-11] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2025-03-06 00:37:59,438] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2025-03-06 00:38:00,388] [pool-1-thread-6] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2025-03-06 00:38:02,305] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2025-03-06 00:38:02,756] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2025-03-06 00:38:04,574] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2025-03-06 00:38:05,681] [pool-1-thread-5] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2025-03-06 00:38:06,383] [pool-1-thread-4] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2025-03-06 00:38:07,132] [pool-1-thread-2] Initializing /data/qa-17335/1.ome.tif: [testng] [2025-03-06 00:38:07,580] [pool-1-thread-11] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2025-03-06 00:38:07,623] [pool-1-thread-6] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2025-03-06 00:38:09,581] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2025-03-06 00:38:11,135] [pool-1-thread-3] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2025-03-06 00:38:12,678] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2025-03-06 00:38:13,116] [pool-1-thread-9] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2025-03-06 00:38:14,485] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2025-03-06 00:38:15,028] [pool-1-thread-4] Initializing /data/qa-17919/f10187.oir: [testng] [2025-03-06 00:38:34,610] [pool-1-thread-2] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir: [testng] [2025-03-06 00:38:36,570] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2025-03-06 00:38:37,435] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2025-03-06 00:38:37,973] [pool-1-thread-1] Initializing /data/qa-16871/XY_0003.oir: [testng] [2025-03-06 00:38:39,323] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2025-03-06 00:38:40,164] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2025-03-06 00:38:43,435] [pool-1-thread-5] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2025-03-06 00:38:44,296] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2025-03-06 00:38:44,807] [pool-1-thread-3] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2025-03-06 00:38:46,480] [pool-1-thread-1] Initializing /data/public/imagesc-105684/1202-interval_10sec_sequence_frame.oir: [testng] [2025-03-06 00:38:46,877] [pool-1-thread-6] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2025-03-06 00:38:53,197] [pool-1-thread-11] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2025-03-06 00:38:55,222] [pool-1-thread-5] Initializing /data/qa-17335/1.oir: [testng] [2025-03-06 00:38:56,813] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2025-03-06 00:38:57,373] [pool-1-thread-3] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2025-03-06 00:38:59,649] [pool-1-thread-11] Initializing /data/olympus/XYZt.ome.tif: [testng] [2025-03-06 00:39:03,297] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] [2025-03-06 00:39:03,889] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2025-03-06 00:39:04,420] [pool-1-thread-2] Initializing /data/cudmore/20190401__0005.oir: [testng] [2025-03-06 00:39:11,129] [pool-1-thread-3] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2025-03-06 00:39:12,098] [pool-1-thread-8] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2025-03-06 00:39:14,885] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2025-03-06 00:39:15,976] [pool-1-thread-1] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2025-03-06 00:39:17,462] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2025-03-06 00:39:18,079] [pool-1-thread-3] Initializing /data/qa-17293/Clipboard.tif: [testng] [2025-03-06 00:39:18,669] [pool-1-thread-9] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2025-03-06 00:39:19,141] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2025-03-06 00:39:21,415] [pool-1-thread-12] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir: [testng] [2025-03-06 00:39:21,828] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2025-03-06 00:39:23,713] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2025-03-06 00:39:24,837] [pool-1-thread-5] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2025-03-06 00:39:25,322] [pool-1-thread-3] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2025-03-06 00:39:27,105] [pool-1-thread-11] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2025-03-06 00:39:27,870] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2025-03-06 00:39:29,612] [pool-1-thread-1] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2025-03-06 00:39:30,458] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2025-03-06 00:39:30,981] [pool-1-thread-9] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2025-03-06 00:39:32,002] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2025-03-06 00:39:33,159] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2025-03-06 00:39:34,555] [pool-1-thread-8] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2025-03-06 00:39:35,585] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2025-03-06 00:39:38,735] [pool-1-thread-9] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2025-03-06 00:39:39,440] [pool-1-thread-6] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2025-03-06 00:39:39,979] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2025-03-06 00:39:42,556] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2025-03-06 00:39:43,615] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2025-03-06 00:39:44,013] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2025-03-06 00:39:45,206] [pool-1-thread-3] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2025-03-06 00:39:45,939] [pool-1-thread-6] Initializing /data/olympus/XYZt.oir: [testng] [2025-03-06 00:39:47,939] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2025-03-06 00:39:49,994] [pool-1-thread-11] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2025-03-06 00:39:50,486] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2025-03-06 00:39:51,385] [pool-1-thread-8] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2025-03-06 00:39:52,841] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2025-03-06 00:39:53,502] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2025-03-06 00:39:54,075] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2025-03-06 00:39:56,525] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2025-03-06 00:39:57,518] [pool-1-thread-8] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2025-03-06 00:39:58,744] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2025-03-06 00:40:00,546] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2025-03-06 00:40:00,966] [pool-1-thread-5] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2025-03-06 00:40:01,420] [pool-1-thread-2] Initializing /data/qa-17917/f10010.oir: [testng] [2025-03-06 00:40:30,806] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2025-03-06 00:40:32,713] [pool-1-thread-12] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2025-03-06 00:40:33,522] [pool-1-thread-6] Initializing /data/olympus/calcium sparks.jpg: [testng] [2025-03-06 00:40:34,827] [pool-1-thread-1] Initializing /data/qa-17270/stack1.oir: [testng] [2025-03-06 00:40:38,807] [pool-1-thread-11] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2025-03-06 00:40:39,265] [pool-1-thread-9] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2025-03-06 00:40:39,917] [pool-1-thread-5] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2025-03-06 00:40:40,652] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2025-03-06 00:40:41,547] [pool-1-thread-12] Initializing /data/olympus/XYZt.vsi: [testng] [2025-03-06 00:40:42,888] [pool-1-thread-3] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2025-03-06 00:40:45,918] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2025-03-06 00:40:46,549] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2025-03-06 00:40:49,300] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2025-03-06 00:40:50,117] [pool-1-thread-9] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2025-03-06 00:40:50,833] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2025-03-06 00:40:51,551] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2025-03-06 00:40:52,810] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] [2025-03-06 00:40:54,514] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2025-03-06 00:40:54,923] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2025-03-06 00:40:58,874] [pool-1-thread-3] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2025-03-06 00:40:59,712] [pool-1-thread-5] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2025-03-06 00:41:00,444] [pool-1-thread-6] Initializing /data/qa-17270/image1.oir: [testng] [2025-03-06 00:41:00,829] [pool-1-thread-8] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2025-03-06 00:41:02,410] [pool-1-thread-1] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2025-03-06 00:41:04,495] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2025-03-06 00:41:05,340] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2025-03-06 00:41:06,268] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2025-03-06 00:41:07,314] [pool-1-thread-7] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2025-03-06 00:41:10,152] [pool-1-thread-9] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2025-03-06 00:41:12,218] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2025-03-06 00:41:13,488] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2025-03-06 00:41:14,453] [pool-1-thread-11] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2025-03-06 00:41:17,464] [pool-1-thread-8] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2025-03-06 00:41:20,295] [pool-1-thread-3] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2025-03-06 00:41:23,264] [pool-1-thread-5] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2025-03-06 00:41:24,029] [pool-1-thread-1] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2025-03-06 00:41:25,299] [pool-1-thread-11] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2025-03-06 00:41:28,177] [pool-1-thread-8] Initializing /data/qa-17922/example_multipart.oir: [testng] [2025-03-06 00:41:51,258] [pool-1-thread-4] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2025-03-06 00:41:53,049] [pool-1-thread-5] Initializing /data/qa-17270/image1.ome.tif: [testng] [2025-03-06 00:41:55,432] [pool-1-thread-1] Initializing /data/qa-17270/alexa488.oir: [testng] [2025-03-06 00:41:57,188] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2025-03-06 00:42:01,124] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2025-03-06 00:42:03,164] [pool-1-thread-5] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2025-03-06 00:42:07,116] [pool-1-thread-11] Initializing /data/public/imagesc-105684/1202-interval_30sec_sequence_frame_z stack.oir: [testng] [2025-03-06 00:42:09,018] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2025-03-06 00:42:15,145] [pool-1-thread-5] Initializing /data/public/imagesc-105684/1202-interval_30sec_sequence_frame.oir: [testng] [2025-03-06 00:42:17,965] [pool-1-thread-4] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2025-03-06 00:42:23,974] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2025-03-06 00:42:26,002] [pool-1-thread-11] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2025-03-06 00:42:31,487] [pool-1-thread-5] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2025-03-06 00:42:35,587] [pool-1-thread-11] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2025-03-06 00:42:39,183] [pool-1-thread-5] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 10388, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 48 minutes 54 seconds Finished: SUCCESS