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Started by upstream project "BIOFORMATS-test-repo" build number 366 originally caused by: Started by upstream project "Trigger" build number 392 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins16750213534192843241.sh + '[' lim = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58308_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:26:33,311 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:26:33,312 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service. [testng] 00:26:33,312 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:26:33,313 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:26:33,313 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:26:33,314 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:26:33,314 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:26:33,314 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:26:33,315 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:26:33,315 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:26:33,316 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:26:33,316 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:26:33,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:26:33,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:26:33,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:26:33,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:26:33,496 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:26:33,496 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:26:33,496 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:26:33,496 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:26:33,496 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4310d43 - End of configuration. [testng] 00:26:33,497 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1b11171f - Registering current configuration as safe fallback point [testng] 00:26:33,497 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 183 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-06 00:26:33,506] [main] java.version = 21 [testng] 00:26:33,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:26:33,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:33,549 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-06_00-26-33.log] [testng] 00:26:33,550 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration. [testng] [2025-03-06 00:26:33,552] [main] testng.directory = /data [testng] [2025-03-06 00:26:33,552] [main] testng.configDirectory = /config [testng] [2025-03-06 00:26:33,561] [main] testng.multiplier = 1.0 [testng] [2025-03-06 00:26:33,561] [main] testng.in-memory = false [testng] [2025-03-06 00:26:33,561] [main] testng.allow-missing = false [testng] [2025-03-06 00:26:33,561] [main] user.language = en [testng] [2025-03-06 00:26:33,561] [main] user.country = ${user.country} [testng] [2025-03-06 00:26:33,561] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-06 00:26:34,100] [main] ---------------------------------------- [testng] [2025-03-06 00:26:34,100] [main] Total files: 21 [testng] [2025-03-06 00:26:34,100] [main] Scan time: 0.538 s (25 ms/file) [testng] [2025-03-06 00:26:34,101] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-06 00:26:45,257] [pool-1-thread-1] Initializing /data/venu/Kontrolle0019.lim: [testng] 00:26:45,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:26:45,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:45,258 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-06_00-26-45.log] [testng] 00:26:45,259 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76ecd67c - End of configuration. [testng] [2025-03-06 00:26:45,611] [pool-1-thread-12] Initializing /data/venu/Kontrolle0014.lim: [testng] 00:26:45,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:26:45,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:45,613 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-06_00-26-45.log] [testng] 00:26:45,613 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44998faf - End of configuration. [testng] [2025-03-06 00:26:45,889] [pool-1-thread-11] Initializing /data/venu/Kontrolle0003.lim: [testng] 00:26:45,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:26:45,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:45,890 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-06_00-26-45.log] [testng] 00:26:45,891 |-INFO in ch.qos.logback.core.sift.SiftProcessor@693c0f13 - End of configuration. [testng] [2025-03-06 00:26:46,230] [pool-1-thread-10] Initializing /data/venu/Kontrolle0020.lim: [testng] 00:26:46,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:26:46,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:46,231 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-06_00-26-46.log] [testng] 00:26:46,231 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29f27f7 - End of configuration. [testng] [2025-03-06 00:26:46,700] [pool-1-thread-9] Initializing /data/venu/Kontrolle0017.lim: [testng] 00:26:46,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:26:46,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:46,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-06_00-26-46.log] [testng] 00:26:46,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c0f5ff0 - End of configuration. [testng] [2025-03-06 00:26:47,212] [pool-1-thread-8] Initializing /data/venu/Kontrolle0010.lim: [testng] 00:26:47,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:26:47,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:47,213 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-06_00-26-47.log] [testng] 00:26:47,213 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50de7fe1 - End of configuration. [testng] [2025-03-06 00:26:47,736] [pool-1-thread-7] Initializing /data/venu/Kontrolle0013.lim: [testng] 00:26:47,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:26:47,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:47,737 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-06_00-26-47.log] [testng] 00:26:47,737 |-INFO in ch.qos.logback.core.sift.SiftProcessor@105f67d1 - End of configuration. [testng] [2025-03-06 00:26:48,290] [pool-1-thread-6] Initializing /data/venu/Kontrolle0011.lim: [testng] 00:26:48,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:26:48,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:48,291 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-06_00-26-48.log] [testng] 00:26:48,292 |-INFO in ch.qos.logback.core.sift.SiftProcessor@604c2618 - End of configuration. [testng] [2025-03-06 00:26:48,745] [pool-1-thread-5] Initializing /data/venu/Kontrolle0021.lim: [testng] 00:26:48,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:26:48,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:48,746 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-06_00-26-48.log] [testng] 00:26:48,747 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61c781c1 - End of configuration. [testng] [2025-03-06 00:26:49,143] [pool-1-thread-4] Initializing /data/venu/Kontrolle0018.lim: [testng] 00:26:49,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:26:49,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:49,144 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-06_00-26-49.log] [testng] 00:26:49,144 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fcef0b1 - End of configuration. [testng] [2025-03-06 00:26:49,671] [pool-1-thread-3] Initializing /data/venu/Kontrolle0015.lim: [testng] 00:26:49,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:26:49,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:49,672 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-06_00-26-49.log] [testng] 00:26:49,672 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13929620 - End of configuration. [testng] [2025-03-06 00:26:50,253] [pool-1-thread-2] Initializing /data/venu/Kontrolle0005.lim: [testng] 00:26:50,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:26:50,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:50,254 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-06_00-26-50.log] [testng] 00:26:50,255 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a6c0258 - End of configuration. [testng] [2025-03-06 00:26:57,128] [pool-1-thread-9] Initializing /data/venu/Kontrolle0004.lim: [testng] [2025-03-06 00:26:57,505] [pool-1-thread-11] Initializing /data/venu/Kontrolle0016.lim: [testng] [2025-03-06 00:26:57,826] [pool-1-thread-1] Initializing /data/venu/Kontrolle0008.lim: [testng] [2025-03-06 00:26:58,196] [pool-1-thread-7] Initializing /data/venu/Kontrolle0002.lim: [testng] [2025-03-06 00:26:58,525] [pool-1-thread-4] Initializing /data/venu/Kontrolle0007.lim: [testng] [2025-03-06 00:26:58,836] [pool-1-thread-3] Initializing /data/venu/Kontrolle0001.lim: [testng] [2025-03-06 00:26:59,177] [pool-1-thread-12] Initializing /data/venu/Kontrolle0012.lim: [testng] [2025-03-06 00:26:59,558] [pool-1-thread-5] Initializing /data/venu/Kontrolle0009.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 34 seconds Finished: SUCCESS