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Started by upstream project "BIOFORMATS-test-repo" build number 366 originally caused by: Started by upstream project "Trigger" build number 392 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins12984565662194549080.sh + '[' bmp = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58318_merge_ci -v /uod/idr/repos/curated/bmp:/data -v /uod/idr-scratch/merge-ci/curated/bmp:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:31:09,890 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:31:09,891 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service. [testng] 00:31:09,891 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:31:09,892 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:31:09,892 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:31:09,893 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:31:09,893 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:31:09,893 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:31:09,893 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:31:09,894 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:31:09,894 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:31:09,895 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:31:10,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:31:10,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:31:10,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:31:10,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:31:10,082 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:31:10,082 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:31:10,082 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:31:10,083 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:31:10,083 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4310d43 - End of configuration. [testng] 00:31:10,084 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1b11171f - Registering current configuration as safe fallback point [testng] 00:31:10,084 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 191 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-06 00:31:10,093] [main] java.version = 21 [testng] 00:31:10,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:31:10,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:10,139 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-06_00-31-10.log] [testng] 00:31:10,141 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration. [testng] [2025-03-06 00:31:10,143] [main] testng.directory = /data [testng] [2025-03-06 00:31:10,143] [main] testng.configDirectory = /config [testng] [2025-03-06 00:31:10,152] [main] testng.multiplier = 1.0 [testng] [2025-03-06 00:31:10,152] [main] testng.in-memory = false [testng] [2025-03-06 00:31:10,152] [main] testng.allow-missing = false [testng] [2025-03-06 00:31:10,152] [main] user.language = en [testng] [2025-03-06 00:31:10,152] [main] user.country = ${user.country} [testng] [2025-03-06 00:31:10,153] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-06 00:31:11,267] [main] ---------------------------------------- [testng] [2025-03-06 00:31:11,267] [main] Total files: 31 [testng] [2025-03-06 00:31:11,267] [main] Scan time: 1.114 s (35 ms/file) [testng] [2025-03-06 00:31:11,267] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 31 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-06 00:31:17,457] [pool-1-thread-1] Initializing /data/curtis/image2.bmp: [testng] 00:31:17,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:31:17,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:17,460 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-06_00-31-17.log] [testng] 00:31:17,461 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31d0a7ba - End of configuration. [testng] [2025-03-06 00:31:17,587] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_Four.bmp: [testng] 00:31:17,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:31:17,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:17,588 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-06_00-31-17.log] [testng] 00:31:17,589 |-INFO in ch.qos.logback.core.sift.SiftProcessor@377b05 - End of configuration. [testng] [2025-03-06 00:31:17,707] [pool-1-thread-11] Initializing /data/brian/images/raw_a_rg.tiff: [testng] 00:31:17,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:31:17,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:17,708 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-06_00-31-17.log] [testng] 00:31:17,708 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23c89263 - End of configuration. [testng] [2025-03-06 00:31:19,093] [pool-1-thread-10] Initializing /data/curtis/image3.bmp: [testng] 00:31:19,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:31:19,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:19,094 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-06_00-31-19.log] [testng] 00:31:19,094 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cd27bf9 - End of configuration. [testng] [2025-03-06 00:31:19,186] [pool-1-thread-9] Initializing /data/big-images/6kx6k.bmp: [testng] 00:31:19,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:31:19,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:19,187 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-06_00-31-19.log] [testng] 00:31:19,187 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f97c453 - End of configuration. [testng] [2025-03-06 00:31:19,281] [pool-1-thread-8] Initializing /data/dennis/kidney_TFl_Eight.bmp: [testng] 00:31:19,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:31:19,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:19,282 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-06_00-31-19.log] [testng] 00:31:19,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41ce8afc - End of configuration. [testng] [2025-03-06 00:31:19,400] [pool-1-thread-7] Initializing /data/frank/cell_mask_error.bmp: [testng] 00:31:19,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:31:19,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:19,401 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-06_00-31-19.log] [testng] 00:31:19,402 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52c0ab2e - End of configuration. [testng] [2025-03-06 00:31:19,521] [pool-1-thread-6] Initializing /data/brian/images/raw_a.bmp: [testng] 00:31:19,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:31:19,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:19,522 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-06_00-31-19.log] [testng] 00:31:19,523 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d38c92c - End of configuration. [testng] [2025-03-06 00:31:19,620] [pool-1-thread-5] Initializing /data/stephane/holo0908.bmp: [testng] 00:31:19,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:31:19,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:19,621 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-06_00-31-19.log] [testng] 00:31:19,621 |-INFO in ch.qos.logback.core.sift.SiftProcessor@611cffa2 - End of configuration. [testng] [2025-03-06 00:31:19,731] [pool-1-thread-4] Initializing /data/dennis/kidney_TFl_Five.bmp: [testng] 00:31:19,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:31:19,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:19,732 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-06_00-31-19.log] [testng] 00:31:19,732 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f337f45 - End of configuration. [testng] [2025-03-06 00:31:19,823] [pool-1-thread-3] Initializing /data/brian/images/kidney_TFl_1_greyscale.bmp: [testng] 00:31:19,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:31:19,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:19,824 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-06_00-31-19.log] [testng] 00:31:19,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@219fe92a - End of configuration. [testng] [2025-03-06 00:31:19,924] [pool-1-thread-2] Initializing /data/brian/images/kidney_TFl_1.bmp: [testng] 00:31:19,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:31:19,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:19,925 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-06_00-31-19.log] [testng] 00:31:19,926 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16f2209e - End of configuration. [testng] [2025-03-06 00:31:22,623] [pool-1-thread-1] Initializing /data/brian/images/raw_a_rg.bmp: [testng] [2025-03-06 00:31:22,694] [pool-1-thread-4] Initializing /data/dennis/kidney_TFl_Three.bmp: [testng] [2025-03-06 00:31:22,759] [pool-1-thread-3] Initializing /data/big-images/6kx6k-grey.bmp: [testng] [2025-03-06 00:31:22,838] [pool-1-thread-10] Initializing /data/curtis/image4.bmp: [testng] [2025-03-06 00:31:22,938] [pool-1-thread-6] Initializing /data/bk/100427RBTLPC_FD3__A___5_T_001_ch_00_image_00025_Z_001.bmp: [testng] [2025-03-06 00:31:23,026] [pool-1-thread-7] Initializing /data/dennis/kidney_TFl_Seven.bmp: [testng] [2025-03-06 00:31:23,137] [pool-1-thread-2] Initializing /data/brian/images/DMSOHigh_001.bmp: [testng] [2025-03-06 00:31:23,246] [pool-1-thread-8] Initializing /data/dennis/kidney_TFl_Nine.bmp: [testng] [2025-03-06 00:31:23,334] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_Six.bmp: [testng] [2025-03-06 00:31:23,553] [pool-1-thread-5] Initializing /data/big-images/8kx8k-grey.bmp: [testng] [2025-03-06 00:31:24,867] [pool-1-thread-10] Initializing /data/curtis/image5.bmp: [testng] [2025-03-06 00:31:24,999] [pool-1-thread-12] Initializing /data/ticket-12971/foo.bmp: [testng] [2025-03-06 00:31:25,089] [pool-1-thread-8] Initializing /data/dennis/kidney_TFl_Two.bmp: [testng] [2025-03-06 00:31:25,187] [pool-1-thread-7] Initializing /data/bk/ch_00.bmp: [testng] [2025-03-06 00:31:25,278] [pool-1-thread-1] Initializing /data/brian/images/23srp5dksub.bmp: [testng] [2025-03-06 00:31:25,373] [pool-1-thread-4] Initializing /data/big-images/8kx8k.bmp: [testng] [2025-03-06 00:31:25,468] [pool-1-thread-2] Initializing /data/curtis/image1.bmp: [testng] [2025-03-06 00:31:25,935] [pool-1-thread-6] Initializing /data/dennis/kidney_TFl_One.bmp: [testng] [2025-03-06 00:31:26,348] [pool-1-thread-10] Initializing /data/qa-4538/22577136_Figure 2_A_ATF6 (GST)_13572.bmp: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1643, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 39 seconds Finished: SUCCESS