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Started by upstream project "BIOFORMATS-test-repo" build number 41 originally caused by: Started by upstream project "Trigger" build number 47 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins17171280016902619241.sh + '[' apng = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_5839_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:26:42,140 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:26:42,142 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:26:42,142 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:26:42,144 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:26:42,144 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:26:42,144 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:26:42,145 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:26:42,145 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:26:42,145 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:26:42,146 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:26:42,146 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:26:42,146 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:26:42,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:26:42,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:26:42,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:26:42,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:26:42,522 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:26:42,522 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:26:42,522 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:26:42,523 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:26:42,523 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:26:42,525 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:26:42,525 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 380 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-22 02:26:42,544] [main] java.version = 1.8.0_342 [testng] 02:26:42,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:26:42,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:42,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-22_02-26-42.log] [testng] 02:26:42,651 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-22 02:26:42,656] [main] testng.directory = /data [testng] [2024-04-22 02:26:42,656] [main] testng.configDirectory = /config [testng] [2024-04-22 02:26:42,677] [main] testng.multiplier = 1.0 [testng] [2024-04-22 02:26:42,677] [main] testng.in-memory = false [testng] [2024-04-22 02:26:42,677] [main] testng.allow-missing = false [testng] [2024-04-22 02:26:42,677] [main] user.language = fr [testng] [2024-04-22 02:26:42,677] [main] user.country = FR [testng] [2024-04-22 02:26:42,678] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-22 02:26:43,225] [main] ---------------------------------------- [testng] [2024-04-22 02:26:43,226] [main] Total files: 21 [testng] [2024-04-22 02:26:43,226] [main] Scan time: 0.547 s (26 ms/file) [testng] [2024-04-22 02:26:43,226] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-22 02:26:44,827] [pool-1-thread-1] Initializing /data/samples/Sun.png: [testng] 02:26:44,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:26:44,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:44,830 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-22_02-26-44.log] [testng] 02:26:44,831 |-INFO in ch.qos.logback.core.sift.SiftProcessor@572c98d0 - End of configuration. [testng] [2024-04-22 02:26:44,885] [pool-1-thread-12] Initializing /data/samples/atom.png: [testng] 02:26:44,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:26:44,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:44,886 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-22_02-26-44.log] [testng] 02:26:44,887 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56837903 - End of configuration. [testng] [2024-04-22 02:26:44,893] [pool-1-thread-11] Initializing /data/samples/orbit.png: [testng] 02:26:44,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:26:44,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:44,895 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-22_02-26-44.log] [testng] 02:26:44,895 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78f5e5de - End of configuration. [testng] [2024-04-22 02:26:44,902] [pool-1-thread-10] Initializing /data/samples/monkey_apng.png: [testng] 02:26:44,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:26:44,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:44,904 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-22_02-26-44.log] [testng] 02:26:44,904 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b58655d - End of configuration. [testng] [2024-04-22 02:26:44,916] [pool-1-thread-9] Initializing /data/qa-7473/x.png: [testng] 02:26:44,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:26:44,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:44,918 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-22_02-26-44.log] [testng] 02:26:44,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b299296 - End of configuration. [testng] [2024-04-22 02:26:44,925] [pool-1-thread-8] Initializing /data/samples/william_wong04.png: [testng] 02:26:44,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:26:44,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:44,927 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-22_02-26-44.log] [testng] 02:26:44,927 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45cee83d - End of configuration. [testng] [2024-04-22 02:26:44,934] [pool-1-thread-7] Initializing /data/samples/daniel_coltri_two.png: [testng] 02:26:44,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:26:44,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:44,935 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-22_02-26-44.log] [testng] 02:26:44,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b454474 - End of configuration. [testng] [2024-04-22 02:26:44,941] [pool-1-thread-6] Initializing /data/qa-7473/n.tif: [testng] 02:26:44,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:26:44,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:44,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-22_02-26-44.log] [testng] 02:26:44,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a861750 - End of configuration. [testng] [2024-04-22 02:26:44,994] [pool-1-thread-5] Initializing /data/samples/MoonPhases.png: [testng] 02:26:44,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:26:44,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:44,996 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-22_02-26-44.log] [testng] 02:26:44,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f578de3 - End of configuration. [testng] [2024-04-22 02:26:45,004] [pool-1-thread-4] Initializing /data/samples/joanna_viera01.png: [testng] 02:26:45,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:26:45,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:45,005 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-22_02-26-45.log] [testng] 02:26:45,006 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b5b85ef - End of configuration. [testng] [2024-04-22 02:26:45,010] [pool-1-thread-3] Initializing /data/samples/Matrix.png: [testng] 02:26:45,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:26:45,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:45,011 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-22_02-26-45.log] [testng] 02:26:45,012 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37e75942 - End of configuration. [testng] [2024-04-22 02:26:45,017] [pool-1-thread-2] Initializing /data/samples/phug_logo.png: [testng] 02:26:45,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:26:45,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:45,019 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-22_02-26-45.log] [testng] 02:26:45,019 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c7b582 - End of configuration. [testng] [2024-04-22 02:26:46,786] [pool-1-thread-7] Initializing /data/samples/william_wong02.png: [testng] [2024-04-22 02:26:46,798] [pool-1-thread-3] Initializing /data/samples/spinfox.png: [testng] [2024-04-22 02:26:46,806] [pool-1-thread-12] Initializing /data/samples/william_wong01.png: [testng] [2024-04-22 02:26:46,815] [pool-1-thread-8] Initializing /data/samples/william_wong05.png: [testng] [2024-04-22 02:26:46,821] [pool-1-thread-2] Initializing /data/colin/test.sfstdge.png: [testng] [2024-04-22 02:26:46,824] [pool-1-thread-11] Initializing /data/samples/daniel_coltri_one.png: [testng] [2024-04-22 02:26:46,831] [pool-1-thread-5] Initializing /data/samples/PhugAnimation3.png: [testng] [2024-04-22 02:26:46,839] [pool-1-thread-1] Initializing /data/samples/chompy2.png: [testng] [2024-04-22 02:26:46,844] [pool-1-thread-10] Initializing /data/samples/StarV838.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 13 seconds Finished: SUCCESS