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Started by upstream project "BIOFORMATS-test-repo" build number 366 originally caused by: Started by upstream project "Trigger" build number 392 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins11982505836510382392.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58449_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 06:26:03,491 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 06:26:03,492 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service. [testng] 06:26:03,492 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:26:03,493 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:26:03,493 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:26:03,494 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:26:03,494 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:26:03,494 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:26:03,494 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:26:03,495 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:26:03,495 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:26:03,495 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:26:03,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:26:03,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:26:03,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:26:03,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:26:03,682 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:26:03,682 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:26:03,682 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:26:03,683 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:26:03,683 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4310d43 - End of configuration. [testng] 06:26:03,684 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1b11171f - Registering current configuration as safe fallback point [testng] 06:26:03,684 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 190 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-06 06:26:03,692] [main] java.version = 21 [testng] 06:26:03,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:26:03,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:26:03,737 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-06_06-26-03.log] [testng] 06:26:03,738 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration. [testng] [2025-03-06 06:26:03,740] [main] testng.directory = /data [testng] [2025-03-06 06:26:03,740] [main] testng.configDirectory = /config [testng] [2025-03-06 06:26:03,749] [main] testng.multiplier = 1.0 [testng] [2025-03-06 06:26:03,749] [main] testng.in-memory = false [testng] [2025-03-06 06:26:03,749] [main] testng.allow-missing = false [testng] [2025-03-06 06:26:03,749] [main] user.language = en [testng] [2025-03-06 06:26:03,749] [main] user.country = ${user.country} [testng] [2025-03-06 06:26:03,750] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-06 06:26:44,207] [main] ---------------------------------------- [testng] [2025-03-06 06:26:44,207] [main] Total files: 31 [testng] [2025-03-06 06:26:44,207] [main] Scan time: 40.457 s (1305 ms/file) [testng] [2025-03-06 06:26:44,208] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-06 06:27:31,243] [pool-1-thread-1] Initializing /data/david/000000_000001.jpx: [testng] 06:27:31,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:27:31,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:27:31,245 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-06_06-27-31.log] [testng] 06:27:31,246 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f260bad - End of configuration. [testng] [2025-03-06 06:27:32,592] [pool-1-thread-12] Initializing /data/vikram/Captured 2.jp2: [testng] 06:27:32,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:27:32,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:27:32,593 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-06_06-27-32.log] [testng] 06:27:32,594 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2359a202 - End of configuration. [testng] [2025-03-06 06:27:33,922] [pool-1-thread-11] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] 06:27:33,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:27:33,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:27:33,924 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-06_06-27-33.log] [testng] 06:27:33,924 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6688d262 - End of configuration. [testng] [2025-03-06 06:27:37,277] [pool-1-thread-10] Initializing /data/david/multichannel-2d test.jp2: [testng] 06:27:37,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:27:37,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:27:37,278 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-06_06-27-37.log] [testng] 06:27:37,278 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b3a2f01 - End of configuration. [testng] [2025-03-06 06:27:38,656] [pool-1-thread-9] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] 06:27:38,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:27:38,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:27:38,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-06_06-27-38.log] [testng] 06:27:38,657 |-INFO in ch.qos.logback.core.sift.SiftProcessor@de3f435 - End of configuration. [testng] [2025-03-06 06:27:40,051] [pool-1-thread-8] Initializing /data/kraig/head.jp2: [testng] 06:27:40,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:27:40,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:27:40,053 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-06_06-27-40.log] [testng] 06:27:40,054 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fba5d2f - End of configuration. [testng] [2025-03-06 06:27:41,457] [pool-1-thread-7] Initializing /data/venu/Multichannel 3.jp2: [testng] 06:27:41,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:27:41,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:27:41,458 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-06_06-27-41.log] [testng] 06:27:41,458 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45a48f90 - End of configuration. [testng] [2025-03-06 06:27:42,881] [pool-1-thread-6] Initializing /data/vikram/Captured 3.jp2: [testng] 06:27:42,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:27:42,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:27:42,882 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-06_06-27-42.log] [testng] 06:27:42,882 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c2b3118 - End of configuration. [testng] [2025-03-06 06:27:44,213] [pool-1-thread-5] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] 06:27:44,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:27:44,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:27:44,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-06_06-27-44.log] [testng] 06:27:44,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40103fab - End of configuration. [testng] [2025-03-06 06:27:46,023] [pool-1-thread-4] Initializing /data/aryeh/flour 12.jp2: [testng] 06:27:46,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:27:46,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:27:46,024 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-06_06-27-46.log] [testng] 06:27:46,024 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b3f016 - End of configuration. [testng] [2025-03-06 06:27:47,330] [pool-1-thread-3] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] 06:27:47,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:27:47,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:27:47,331 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-06_06-27-47.log] [testng] 06:27:47,331 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7240deac - End of configuration. [testng] [2025-03-06 06:27:48,470] [pool-1-thread-2] Initializing /data/big-images/4kx4k.jpf: [testng] 06:27:48,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:27:48,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:27:48,471 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-06_06-27-48.log] [testng] 06:27:48,472 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1675228b - End of configuration. [testng] [2025-03-06 06:27:59,374] [pool-1-thread-12] Initializing /data/big-images/2kx2k.jpf: [testng] [2025-03-06 06:28:00,734] [pool-1-thread-6] Initializing /data/misc/clown-rgb.jp2: [testng] [2025-03-06 06:28:02,157] [pool-1-thread-8] Initializing /data/frans/flower.jp2: [testng] [2025-03-06 06:28:03,367] [pool-1-thread-4] Initializing /data/misc/clown-rgb.jbig: [testng] [2025-03-06 06:28:08,052] [pool-1-thread-1] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [2025-03-06 06:28:09,857] [pool-1-thread-9] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] [2025-03-06 06:28:13,417] [pool-1-thread-11] Initializing /data/vikram/Captured 1.jp2: [testng] [2025-03-06 06:28:16,917] [pool-1-thread-7] Initializing /data/big-images/8kx8k.jpf: [testng] [2025-03-06 06:28:19,124] [pool-1-thread-6] Initializing /data/misc/clown-rgb.jpc: [testng] [2025-03-06 06:28:25,141] [pool-1-thread-11] Initializing /data/venu/Multichannel 3a.jpg: [testng] [2025-03-06 06:28:25,505] [pool-1-thread-4] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] [2025-03-06 06:28:28,968] [pool-1-thread-12] Initializing /data/vikram/Captured 5.jp2: [testng] [2025-03-06 06:28:30,396] [pool-1-thread-9] Initializing /data/david/cy5-tph.jp2: [testng] [2025-03-06 06:28:32,873] [pool-1-thread-8] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] [2025-03-06 06:28:34,584] [pool-1-thread-6] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2025-03-06 06:28:39,384] [pool-1-thread-11] Initializing /data/vikram/Captured 4.jp2: [testng] [2025-03-06 06:28:43,111] [pool-1-thread-12] Initializing /data/david/C1R1_FOS.jp2: [testng] [2025-03-06 06:28:44,529] [pool-1-thread-2] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 7 minutes 19 seconds Finished: SUCCESS