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Started by upstream project "BIOFORMATS-test-repo" build number 367 originally caused by: Started by upstream project "Trigger" build number 393 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins12129518106544963321.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58458_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:23:59,276 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:23:59,278 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 00:23:59,278 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:23:59,279 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:23:59,280 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:23:59,280 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:23:59,280 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:23:59,280 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:23:59,281 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:23:59,281 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:23:59,281 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:23:59,281 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:23:59,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:23:59,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:23:59,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:23:59,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:23:59,558 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:23:59,558 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:23:59,558 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:23:59,559 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:23:59,559 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 00:23:59,560 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 00:23:59,560 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 279 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-07 00:23:59,570] [main] java.version = 1.8.0_342 [testng] 00:23:59,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:23:59,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:59,654 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-07_00-23-59.log] [testng] 00:23:59,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-07 00:23:59,658] [main] testng.directory = /data [testng] [2025-03-07 00:23:59,658] [main] testng.configDirectory = /config [testng] [2025-03-07 00:23:59,675] [main] testng.multiplier = 1.0 [testng] [2025-03-07 00:23:59,675] [main] testng.in-memory = false [testng] [2025-03-07 00:23:59,675] [main] testng.allow-missing = false [testng] [2025-03-07 00:23:59,675] [main] user.language = en [testng] [2025-03-07 00:23:59,675] [main] user.country = ${user.country} [testng] [2025-03-07 00:23:59,675] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-07 00:24:00,717] [main] ---------------------------------------- [testng] [2025-03-07 00:24:00,717] [main] Total files: 36 [testng] [2025-03-07 00:24:00,717] [main] Scan time: 1.042 s (28 ms/file) [testng] [2025-03-07 00:24:00,717] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-07 00:24:02,514] [pool-1-thread-1] Initializing /data/generated/mri-stack13.pcx: [testng] 00:24:02,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:24:02,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:02,516 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-07_00-24-02.log] [testng] 00:24:02,516 |-INFO in ch.qos.logback.core.sift.SiftProcessor@470cc146 - End of configuration. [testng] [2025-03-07 00:24:02,566] [pool-1-thread-12] Initializing /data/generated/mri-stack23.pcx: [testng] 00:24:02,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:24:02,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:02,567 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-07_00-24-02.log] [testng] 00:24:02,567 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c72b506 - End of configuration. [testng] [2025-03-07 00:24:02,584] [pool-1-thread-11] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] 00:24:02,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:24:02,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:02,585 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-07_00-24-02.log] [testng] 00:24:02,585 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cc9ee1 - End of configuration. [testng] [2025-03-07 00:24:02,606] [pool-1-thread-10] Initializing /data/generated/mri-stack17.pcx: [testng] 00:24:02,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:24:02,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:02,607 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-07_00-24-02.log] [testng] 00:24:02,608 |-INFO in ch.qos.logback.core.sift.SiftProcessor@415fc1ed - End of configuration. [testng] [2025-03-07 00:24:02,629] [pool-1-thread-9] Initializing /data/generated/mri-stack5.pcx: [testng] 00:24:02,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:24:02,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:02,630 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-07_00-24-02.log] [testng] 00:24:02,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@718efea - End of configuration. [testng] [2025-03-07 00:24:02,652] [pool-1-thread-8] Initializing /data/generated/mri-stack7.pcx: [testng] 00:24:02,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:24:02,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:02,652 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-07_00-24-02.log] [testng] 00:24:02,653 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9832327 - End of configuration. [testng] [2025-03-07 00:24:02,673] [pool-1-thread-7] Initializing /data/generated/mri-stack11.pcx: [testng] 00:24:02,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:24:02,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:02,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-07_00-24-02.log] [testng] 00:24:02,674 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e9edab5 - End of configuration. [testng] [2025-03-07 00:24:02,701] [pool-1-thread-6] Initializing /data/generated/mri-stack4.pcx: [testng] 00:24:02,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:24:02,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:02,702 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-07_00-24-02.log] [testng] 00:24:02,708 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f758c0b - End of configuration. [testng] [2025-03-07 00:24:02,734] [pool-1-thread-5] Initializing /data/generated/mri-stack15.pcx: [testng] 00:24:02,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:24:02,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:02,735 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-07_00-24-02.log] [testng] 00:24:02,736 |-INFO in ch.qos.logback.core.sift.SiftProcessor@684d5052 - End of configuration. [testng] [2025-03-07 00:24:02,762] [pool-1-thread-4] Initializing /data/generated/mri-stack2.pcx: [testng] 00:24:02,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:24:02,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:02,763 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-07_00-24-02.log] [testng] 00:24:02,764 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19510582 - End of configuration. [testng] [2025-03-07 00:24:02,791] [pool-1-thread-3] Initializing /data/generated/mri-stack18.pcx: [testng] 00:24:02,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:24:02,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:02,792 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-07_00-24-02.log] [testng] 00:24:02,793 |-INFO in ch.qos.logback.core.sift.SiftProcessor@250dad73 - End of configuration. [testng] [2025-03-07 00:24:02,814] [pool-1-thread-2] Initializing /data/generated/mri-stack8.pcx: [testng] 00:24:02,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:24:02,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:02,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-07_00-24-02.log] [testng] 00:24:02,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6843df60 - End of configuration. [testng] [2025-03-07 00:24:05,291] [pool-1-thread-9] Initializing /data/generated/mri-stack3.pcx: [testng] [2025-03-07 00:24:05,305] [pool-1-thread-3] Initializing /data/generated/mri-stack22.pcx: [testng] [2025-03-07 00:24:05,323] [pool-1-thread-1] Initializing /data/generated/mri-stack20.pcx: [testng] [2025-03-07 00:24:05,336] [pool-1-thread-11] Initializing /data/generated/mri-stack19.pcx: [testng] [2025-03-07 00:24:05,353] [pool-1-thread-12] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2025-03-07 00:24:05,367] [pool-1-thread-10] Initializing /data/generated/mri-stack16.pcx: [testng] [2025-03-07 00:24:05,382] [pool-1-thread-7] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] [2025-03-07 00:24:05,399] [pool-1-thread-6] Initializing /data/generated/mri-stack1.pcx: [testng] [2025-03-07 00:24:05,410] [pool-1-thread-5] Initializing /data/generated/mri-stack24.pcx: [testng] [2025-03-07 00:24:05,423] [pool-1-thread-4] Initializing /data/generated/mri-stack21.pcx: [testng] [2025-03-07 00:24:05,435] [pool-1-thread-2] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2025-03-07 00:24:05,455] [pool-1-thread-8] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2025-03-07 00:24:05,986] [pool-1-thread-6] Initializing /data/generated/mri-stack25.pcx: [testng] [2025-03-07 00:24:06,004] [pool-1-thread-1] Initializing /data/generated/mri-stack9.pcx: [testng] [2025-03-07 00:24:06,018] [pool-1-thread-5] Initializing /data/generated/mri-stack26.pcx: [testng] [2025-03-07 00:24:06,041] [pool-1-thread-9] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2025-03-07 00:24:06,063] [pool-1-thread-10] Initializing /data/generated/mri-stack6.pcx: [testng] [2025-03-07 00:24:06,094] [pool-1-thread-11] Initializing /data/generated/mri-stack14.pcx: [testng] [2025-03-07 00:24:06,146] [pool-1-thread-4] Initializing /data/generated/mri-stack12.pcx: [testng] [2025-03-07 00:24:06,181] [pool-1-thread-3] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2025-03-07 00:24:06,556] [pool-1-thread-6] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2025-03-07 00:24:06,587] [pool-1-thread-1] Initializing /data/generated/mri-stack0.pcx: [testng] [2025-03-07 00:24:06,618] [pool-1-thread-5] Initializing /data/generated/mri-stack10.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 13 seconds Finished: SUCCESS