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Started by upstream project "BIOFORMATS-test-repo" build number 367 originally caused by: Started by upstream project "Trigger" build number 393 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins10177450517043971454.sh + '[' zip = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58480_merge_ci -v /uod/idr/repos/curated/zip:/data -v /uod/idr-scratch/merge-ci/curated/zip:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:34:51,118 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:34:51,120 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 00:34:51,120 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:34:51,121 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:34:51,121 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:34:51,121 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:34:51,121 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:34:51,121 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:34:51,122 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:34:51,122 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:34:51,122 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:34:51,123 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:34:51,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:34:51,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:34:51,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:34:51,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:34:51,398 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:34:51,399 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:34:51,399 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:34:51,399 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:34:51,399 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 00:34:51,400 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 00:34:51,400 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 278 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-07 00:34:51,411] [main] java.version = 1.8.0_342 [testng] 00:34:51,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:34:51,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:51,462 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-07_00-34-51.log] [testng] 00:34:51,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-07 00:34:51,466] [main] testng.directory = /data [testng] [2025-03-07 00:34:51,466] [main] testng.configDirectory = /config [testng] [2025-03-07 00:34:51,479] [main] testng.multiplier = 1.0 [testng] [2025-03-07 00:34:51,479] [main] testng.in-memory = false [testng] [2025-03-07 00:34:51,479] [main] testng.allow-missing = false [testng] [2025-03-07 00:34:51,479] [main] user.language = en [testng] [2025-03-07 00:34:51,479] [main] user.country = ${user.country} [testng] [2025-03-07 00:34:51,479] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-07 00:34:52,202] [main] ---------------------------------------- [testng] [2025-03-07 00:34:52,202] [main] Total files: 22 [testng] [2025-03-07 00:34:52,202] [main] Scan time: 0.723 s (32 ms/file) [testng] [2025-03-07 00:34:52,203] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 22 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-07 00:38:49,550] [pool-1-thread-1] Initializing /data/samples/sdub.zip: [testng] 00:38:49,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:38:49,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:49,552 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-07_00-38-49.log] [testng] 00:38:49,552 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44f2e79 - End of configuration. [testng] [2025-03-07 00:38:51,296] [pool-1-thread-12] Initializing /data/imagej/mri-stack.zip: [testng] 00:38:51,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:38:51,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:51,297 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-07_00-38-51.log] [testng] 00:38:51,297 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d62de15 - End of configuration. [testng] [2025-03-07 00:38:58,908] [pool-1-thread-11] Initializing /data/imagej/hela-cells.zip: [testng] 00:38:58,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:38:58,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:58,909 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-07_00-38-58.log] [testng] 00:38:58,909 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9d9411b - End of configuration. [testng] [2025-03-07 00:39:08,504] [pool-1-thread-10] Initializing /data/imagej/watershed-animation.zip: [testng] 00:39:08,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:39:08,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:39:08,505 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-07_00-39-08.log] [testng] 00:39:08,505 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f466cda - End of configuration. [testng] [2025-03-07 00:39:16,692] [pool-1-thread-9] Initializing /data/imagej/4D-Stack(256x256x20x10).zip: [testng] 00:39:16,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:39:16,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:39:16,692 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-07_00-39-16.log] [testng] 00:39:16,693 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fc543eb - End of configuration. [testng] [2025-03-07 00:39:33,719] [pool-1-thread-8] Initializing /data/imagej/gel-electrophoresis.zip: [testng] 00:39:33,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:39:33,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:39:33,720 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-07_00-39-33.log] [testng] 00:39:33,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61a6a96 - End of configuration. [testng] [2025-03-07 00:39:41,719] [pool-1-thread-7] Initializing /data/imagej/cheetah_256_8.tif.zip: [testng] 00:39:41,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:39:41,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:39:41,720 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-07_00-39-41.log] [testng] 00:39:41,721 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50f931b4 - End of configuration. [testng] [2025-03-07 00:39:51,994] [pool-1-thread-6] Initializing /data/imagej/xrays.zip: [testng] 00:39:51,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:39:51,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:39:51,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-07_00-39-51.log] [testng] 00:39:51,995 |-INFO in ch.qos.logback.core.sift.SiftProcessor@281aa6d2 - End of configuration. [testng] [2025-03-07 00:39:57,573] [pool-1-thread-5] Initializing /data/imagej/confocal-stack.zip: [testng] 00:39:57,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:39:57,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:39:57,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-07_00-39-57.log] [testng] 00:39:57,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@477af182 - End of configuration. [testng] [2025-03-07 00:40:19,840] [pool-1-thread-4] Initializing /data/imagej/FluorescentCells.zip: [testng] 00:40:19,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:40:19,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:19,841 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-07_00-40-19.log] [testng] 00:40:19,842 |-INFO in ch.qos.logback.core.sift.SiftProcessor@656f1568 - End of configuration. [testng] [2025-03-07 00:40:28,370] [pool-1-thread-3] Initializing /data/imagej/fat-cells.zip: [testng] 00:40:28,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:40:28,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:28,372 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-07_00-40-28.log] [testng] 00:40:28,372 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ad352f - End of configuration. [testng] [2025-03-07 00:40:44,538] [pool-1-thread-2] Initializing /data/imagej/Rat_Hippocampal_Neuron2.zip: [testng] 00:40:44,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:40:44,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:44,539 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-07_00-40-44.log] [testng] 00:40:44,539 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34f00d67 - End of configuration. [testng] [2025-03-07 00:41:24,636] [pool-1-thread-1] Initializing /data/imagej/se3.zip: [testng] [2025-03-07 00:42:24,749] [pool-1-thread-6] Initializing /data/imagej/RatBrain.zip: [testng] [2025-03-07 00:42:53,126] [pool-1-thread-12] Initializing /data/imagej/blood-brain-barrier.zip: [testng] [2025-03-07 00:43:18,596] [pool-1-thread-10] Initializing /data/imagej/Rat_Hippocampal_Neuron.zip: [testng] [2025-03-07 00:43:35,733] [pool-1-thread-4] Initializing /data/imagej/scala-media.zip: [testng] [2025-03-07 00:43:47,866] [pool-1-thread-7] Initializing /data/imagej/confocal-series.zip: [testng] [2025-03-07 00:44:28,712] [pool-1-thread-8] Initializing /data/imagej/3D_Chromosome.zip: [testng] [2025-03-07 00:44:37,741] [pool-1-thread-11] Initializing /data/imagej/flybrain.zip: [testng] [2025-03-07 00:44:56,683] [pool-1-thread-2] Initializing /data/imagej/m51.zip: [testng] [2025-03-07 00:45:01,471] [pool-1-thread-6] Initializing /data/samples/bat-cochlea-volume.zip: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1166, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 16 minutes 22 seconds Finished: SUCCESS