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Started by upstream project "BIOFORMATS-test-repo" build number 367 originally caused by: Started by upstream project "Trigger" build number 393 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins5478115078532302560.sh + '[' specs = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58485_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:38:30,871 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:38:30,873 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 00:38:30,873 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:38:30,874 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:38:30,874 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:38:30,875 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:38:30,875 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:38:30,875 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:38:30,875 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:38:30,876 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:38:30,876 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:38:30,876 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:38:31,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:38:31,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:38:31,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:38:31,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:38:31,125 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:38:31,126 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:38:31,126 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:38:31,126 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:38:31,126 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 00:38:31,127 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 00:38:31,127 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 252 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-07 00:38:31,136] [main] java.version = 1.8.0_342 [testng] 00:38:31,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:38:31,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:31,183 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-07_00-38-31.log] [testng] 00:38:31,185 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-07 00:38:31,186] [main] testng.directory = /data [testng] [2025-03-07 00:38:31,187] [main] testng.configDirectory = /config [testng] [2025-03-07 00:38:31,199] [main] testng.multiplier = 1.0 [testng] [2025-03-07 00:38:31,199] [main] testng.in-memory = false [testng] [2025-03-07 00:38:31,199] [main] testng.allow-missing = false [testng] [2025-03-07 00:38:31,199] [main] user.language = en [testng] [2025-03-07 00:38:31,199] [main] user.country = ${user.country} [testng] [2025-03-07 00:38:31,199] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-07 00:48:20,466] [main] ---------------------------------------- [testng] [2025-03-07 00:48:20,466] [main] Total files: 226 [testng] [2025-03-07 00:48:20,466] [main] Scan time: 589.267 s (2607 ms/file) [testng] [2025-03-07 00:48:20,466] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-07 00:54:45,558] [pool-1-thread-1] Initializing /data/fluoview/Sample_XT.tif: [testng] 00:54:45,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:54:45,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:45,560 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-07_00-54-45.log] [testng] 00:54:45,561 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19e9e10 - End of configuration. [testng] [2025-03-07 00:54:46,081] [pool-1-thread-12] Initializing /data/fluoview/SpineAnimation.avi: [testng] 00:54:46,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:54:46,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:46,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-07_00-54-46.log] [testng] 00:54:46,083 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48511f05 - End of configuration. [testng] [2025-03-07 00:54:46,256] [pool-1-thread-11] Initializing /data/iplab/Blend_Fitc.IPL: [testng] 00:54:46,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:54:46,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:46,257 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-07_00-54-46.log] [testng] 00:54:46,258 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c2fdef2 - End of configuration. [testng] [2025-03-07 00:54:46,336] [pool-1-thread-10] Initializing /data/iplab/16Bit XRay.IPL: [testng] 00:54:46,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:54:46,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:46,337 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-07_00-54-46.log] [testng] 00:54:46,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f61f4ac - End of configuration. [testng] [2025-03-07 00:54:46,416] [pool-1-thread-9] Initializing /data/iplab/Color Histology.IPL: [testng] 00:54:46,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:54:46,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:46,417 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-07_00-54-46.log] [testng] 00:54:46,417 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bb38a89 - End of configuration. [testng] [2025-03-07 00:54:46,537] [pool-1-thread-8] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] 00:54:46,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:54:46,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:46,539 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-07_00-54-46.log] [testng] 00:54:46,539 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f1d98be - End of configuration. [testng] [2025-03-07 00:54:47,096] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] 00:54:47,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:54:47,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:47,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-07_00-54-47.log] [testng] 00:54:47,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f8cbe25 - End of configuration. [testng] [2025-03-07 00:54:47,626] [pool-1-thread-6] Initializing /data/iplab/Blend_Final.IPL: [testng] 00:54:47,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:54:47,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:47,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-07_00-54-47.log] [testng] 00:54:47,628 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cf5d368 - End of configuration. [testng] [2025-03-07 00:54:47,733] [pool-1-thread-5] Initializing /data/iplab/Color Image.IPL: [testng] 00:54:47,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:54:47,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:47,734 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-07_00-54-47.log] [testng] 00:54:47,735 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d128078 - End of configuration. [testng] [2025-03-07 00:54:47,830] [pool-1-thread-4] Initializing /data/iplab/3t3 Cell.IPL: [testng] 00:54:47,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:54:47,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:47,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-07_00-54-47.log] [testng] 00:54:47,832 |-INFO in ch.qos.logback.core.sift.SiftProcessor@472dfcb1 - End of configuration. [testng] [2025-03-07 00:54:47,913] [pool-1-thread-3] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] 00:54:47,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:54:47,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:47,914 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-07_00-54-47.log] [testng] 00:54:47,914 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3299781a - End of configuration. [testng] [2025-03-07 00:54:48,002] [pool-1-thread-2] Initializing /data/fluoview/SpineAnimation.tif: [testng] 00:54:48,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:54:48,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:48,004 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-07_00-54-48.log] [testng] 00:54:48,004 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4564587d - End of configuration. [testng] [2025-03-07 00:54:51,559] [pool-1-thread-10] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [2025-03-07 00:54:51,750] [pool-1-thread-5] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] [2025-03-07 00:54:52,361] [pool-1-thread-4] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] [2025-03-07 00:54:52,957] [pool-1-thread-9] Initializing /data/iplab/Blend_Tritc.IPL: [testng] [2025-03-07 00:54:53,066] [pool-1-thread-6] Initializing /data/iplab/Chromosomes.IPL: [testng] [2025-03-07 00:54:53,219] [pool-1-thread-11] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] [2025-03-07 00:54:54,411] [pool-1-thread-3] Initializing /data/iplab/Blend_Dapi.IPL: [testng] [2025-03-07 00:54:54,656] [pool-1-thread-12] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] [2025-03-07 00:54:57,062] [pool-1-thread-6] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] [2025-03-07 00:54:58,202] [pool-1-thread-9] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2025-03-07 00:54:59,448] [pool-1-thread-3] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2025-03-07 00:54:59,678] [pool-1-thread-7] Initializing /data/fluoview/Sample_XYT.TIF: [testng] [2025-03-07 00:55:00,643] [pool-1-thread-10] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] [2025-03-07 00:55:01,660] [pool-1-thread-8] Initializing /data/iplab/Actin.IPL: [testng] [2025-03-07 00:55:02,024] [pool-1-thread-1] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [2025-03-07 00:55:02,638] [pool-1-thread-2] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 16 minutes 49 seconds Finished: SUCCESS