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Started by upstream project "BIOFORMATS-test-repo" build number 367 originally caused by: Started by upstream project "Trigger" build number 393 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins11690867939144482630.sh + '[' targa = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58496_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:56:33,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:56:33,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:56:33,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:56:33,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:56:33,721 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:56:33,721 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:56:33,721 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:56:33,722 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:56:33,722 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7e0b85f9 - End of configuration. [testng] 00:56:33,723 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6a28ffa4 - Registering current configuration as safe fallback point [testng] 00:56:33,723 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48ae9b55 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 470 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-07 00:56:33,734] [main] java.version = 1.8.0_342 [testng] 00:56:33,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:56:33,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:33,788 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-07_00-56-33.log] [testng] 00:56:33,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-07 00:56:33,793] [main] testng.directory = /data [testng] [2025-03-07 00:56:33,793] [main] testng.configDirectory = /config [testng] [2025-03-07 00:56:33,806] [main] testng.multiplier = 1.0 [testng] [2025-03-07 00:56:33,807] [main] testng.in-memory = false [testng] [2025-03-07 00:56:33,807] [main] testng.allow-missing = false [testng] [2025-03-07 00:56:33,807] [main] user.language = en [testng] [2025-03-07 00:56:33,807] [main] user.country = ${user.country} [testng] [2025-03-07 00:56:33,807] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-07 00:56:35,238] [main] ---------------------------------------- [testng] [2025-03-07 00:56:35,238] [main] Total files: 21 [testng] [2025-03-07 00:56:35,238] [main] Scan time: 1.431 s (68 ms/file) [testng] [2025-03-07 00:56:35,238] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-07 00:56:45,574] [pool-1-thread-1] Initializing /data/samples/UTC16.TGA: [testng] 00:56:45,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:56:45,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:45,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-07_00-56-45.log] [testng] 00:56:45,577 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62323bf8 - End of configuration. [testng] [2025-03-07 00:56:46,578] [pool-1-thread-12] Initializing /data/samples/UBW8.TGA: [testng] 00:56:46,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:56:46,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:46,579 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-07_00-56-46.log] [testng] 00:56:46,580 |-INFO in ch.qos.logback.core.sift.SiftProcessor@791b6501 - End of configuration. [testng] [2025-03-07 00:56:47,188] [pool-1-thread-11] Initializing /data/samples/XING_T24.TGA: [testng] 00:56:47,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:56:47,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:47,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-07_00-56-47.log] [testng] 00:56:47,190 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f90a36 - End of configuration. [testng] [2025-03-07 00:56:47,658] [pool-1-thread-10] Initializing /data/samples/FLAG_T32.TGA: [testng] 00:56:47,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:56:47,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:47,659 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-07_00-56-47.log] [testng] 00:56:47,659 |-INFO in ch.qos.logback.core.sift.SiftProcessor@390d4af7 - End of configuration. [testng] [2025-03-07 00:56:48,210] [pool-1-thread-9] Initializing /data/samples/FLAG_B32.TGA: [testng] 00:56:48,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:56:48,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:48,211 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-07_00-56-48.log] [testng] 00:56:48,211 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63fb5fb9 - End of configuration. [testng] [2025-03-07 00:56:48,565] [pool-1-thread-8] Initializing /data/samples/CTC24.TGA: [testng] 00:56:48,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:56:48,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:48,566 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-07_00-56-48.log] [testng] 00:56:48,567 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e1ba1ff - End of configuration. [testng] [2025-03-07 00:56:48,989] [pool-1-thread-7] Initializing /data/samples/XING_B24.TGA: [testng] 00:56:48,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:56:48,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:48,990 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-07_00-56-48.log] [testng] 00:56:48,990 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2db5d196 - End of configuration. [testng] [2025-03-07 00:56:49,254] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA: [testng] 00:56:49,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:56:49,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:49,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-07_00-56-49.log] [testng] 00:56:49,255 |-INFO in ch.qos.logback.core.sift.SiftProcessor@454507c4 - End of configuration. [testng] [2025-03-07 00:56:49,490] [pool-1-thread-5] Initializing /data/samples/FLAG_T16.TGA: [testng] 00:56:49,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:56:49,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:49,491 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-07_00-56-49.log] [testng] 00:56:49,492 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68fbca23 - End of configuration. [testng] [2025-03-07 00:56:49,740] [pool-1-thread-4] Initializing /data/samples/FLAG_B24.TGA: [testng] 00:56:49,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:56:49,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:49,741 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-07_00-56-49.log] [testng] 00:56:49,741 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a4f5bba - End of configuration. [testng] [2025-03-07 00:56:50,080] [pool-1-thread-3] Initializing /data/samples/XING_T32.TGA: [testng] 00:56:50,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:56:50,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:50,080 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-07_00-56-50.log] [testng] 00:56:50,081 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67137a57 - End of configuration. [testng] [2025-03-07 00:56:50,676] [pool-1-thread-2] Initializing /data/samples/CBW8.TGA: [testng] 00:56:50,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:56:50,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:50,677 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-07_00-56-50.log] [testng] 00:56:50,678 |-INFO in ch.qos.logback.core.sift.SiftProcessor@205ca225 - End of configuration. [testng] [2025-03-07 00:56:55,302] [pool-1-thread-12] Initializing /data/samples/XING_B32.TGA: [testng] [2025-03-07 00:56:55,559] [pool-1-thread-5] Initializing /data/samples/MARBLES.TGA: [testng] [2025-03-07 00:56:55,811] [pool-1-thread-1] Initializing /data/samples/CCM8.TGA: [testng] [2025-03-07 00:56:56,180] [pool-1-thread-6] Initializing /data/samples/XING_T16.TGA: [testng] [2025-03-07 00:56:56,501] [pool-1-thread-9] Initializing /data/samples/UTC32.TGA: [testng] [2025-03-07 00:56:56,717] [pool-1-thread-4] Initializing /data/samples/XING_B16.TGA: [testng] [2025-03-07 00:56:56,941] [pool-1-thread-7] Initializing /data/samples/UCM8.TGA: [testng] [2025-03-07 00:56:57,156] [pool-1-thread-11] Initializing /data/samples/UTC24.TGA: [testng] [2025-03-07 00:56:57,359] [pool-1-thread-3] Initializing /data/samples/FLAG_B16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 34 seconds Finished: SUCCESS