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Started by upstream project "BIOFORMATS-test-repo" build number 367 originally caused by: Started by upstream project "Trigger" build number 393 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins7004559251815757906.sh + '[' pict = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58509_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:16:34,746 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:16:34,748 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 01:16:34,748 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:16:34,749 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:16:34,749 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:16:34,750 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:16:34,750 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:16:34,750 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:16:34,750 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:16:34,751 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:16:34,751 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:16:34,751 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:16:34,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:16:34,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:16:35,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:16:35,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:16:35,016 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:16:35,016 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:16:35,016 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:16:35,016 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:16:35,016 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 01:16:35,017 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 01:16:35,017 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 267 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-07 01:16:35,027] [main] java.version = 1.8.0_342 [testng] 01:16:35,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:16:35,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:16:35,075 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-07_01-16-35.log] [testng] 01:16:35,077 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-07 01:16:35,079] [main] testng.directory = /data [testng] [2025-03-07 01:16:35,079] [main] testng.configDirectory = /config [testng] [2025-03-07 01:16:35,092] [main] testng.multiplier = 1.0 [testng] [2025-03-07 01:16:35,092] [main] testng.in-memory = false [testng] [2025-03-07 01:16:35,092] [main] testng.allow-missing = false [testng] [2025-03-07 01:16:35,092] [main] user.language = en [testng] [2025-03-07 01:16:35,092] [main] user.country = ${user.country} [testng] [2025-03-07 01:16:35,092] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-07 01:16:35,908] [main] ---------------------------------------- [testng] [2025-03-07 01:16:35,908] [main] Total files: 25 [testng] [2025-03-07 01:16:35,908] [main] Scan time: 0.816 s (32 ms/file) [testng] [2025-03-07 01:16:35,909] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-07 01:16:50,329] [pool-1-thread-1] Initializing /data/misc/planet.png: [testng] 01:16:50,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:16:50,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:16:50,331 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-07_01-16-50.log] [testng] 01:16:50,331 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65c908db - End of configuration. [testng] [2025-03-07 01:16:50,409] [pool-1-thread-12] Initializing /data/brian/images/GRN.PCT: [testng] 01:16:50,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:16:50,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:16:50,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-07_01-16-50.log] [testng] 01:16:50,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f938b7c - End of configuration. [testng] [2025-03-07 01:16:50,963] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B24.PCT: [testng] 01:16:50,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:16:50,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:16:50,965 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-07_01-16-50.log] [testng] 01:16:50,965 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b170bb9 - End of configuration. [testng] [2025-03-07 01:16:51,565] [pool-1-thread-10] Initializing /data/jqd/mire32.pict: [testng] 01:16:51,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:16:51,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:16:51,566 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-07_01-16-51.log] [testng] 01:16:51,566 |-INFO in ch.qos.logback.core.sift.SiftProcessor@179168ef - End of configuration. [testng] [2025-03-07 01:16:52,147] [pool-1-thread-9] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] 01:16:52,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:16:52,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:16:52,149 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-07_01-16-52.log] [testng] 01:16:52,149 |-INFO in ch.qos.logback.core.sift.SiftProcessor@782be70a - End of configuration. [testng] [2025-03-07 01:16:52,815] [pool-1-thread-8] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 01:16:52,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:16:52,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:16:52,817 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-07_01-16-52.log] [testng] 01:16:52,817 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d2e63b0 - End of configuration. [testng] [2025-03-07 01:16:53,591] [pool-1-thread-7] Initializing /data/wayne/PotatoMeristem.pict: [testng] 01:16:53,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:16:53,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:16:53,592 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-07_01-16-53.log] [testng] 01:16:53,592 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39c1f8e6 - End of configuration. [testng] [2025-03-07 01:16:54,241] [pool-1-thread-6] Initializing /data/misc/planet2.pict: [testng] 01:16:54,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:16:54,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:16:54,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-07_01-16-54.log] [testng] 01:16:54,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18c618bc - End of configuration. [testng] [2025-03-07 01:16:54,829] [pool-1-thread-5] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 01:16:54,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:16:54,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:16:54,830 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-07_01-16-54.log] [testng] 01:16:54,830 |-INFO in ch.qos.logback.core.sift.SiftProcessor@525271be - End of configuration. [testng] [2025-03-07 01:16:55,461] [pool-1-thread-4] Initializing /data/brian/images/WHT.PCT: [testng] 01:16:55,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:16:55,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:16:55,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-07_01-16-55.log] [testng] 01:16:55,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79b054a - End of configuration. [testng] [2025-03-07 01:16:56,064] [pool-1-thread-3] Initializing /data/brian/images/FLAG_RGB.pct: [testng] 01:16:56,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:16:56,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:16:56,066 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-07_01-16-56.log] [testng] 01:16:56,066 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d218b63 - End of configuration. [testng] [2025-03-07 01:16:56,584] [pool-1-thread-2] Initializing /data/brian/images/BLU.PCT: [testng] 01:16:56,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:16:56,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:16:56,585 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-07_01-16-56.log] [testng] 01:16:56,585 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fd95b50 - End of configuration. [testng] [2025-03-07 01:17:00,254] [pool-1-thread-1] Initializing /data/brian/images/VENUS.pct: [testng] [2025-03-07 01:17:02,331] [pool-1-thread-3] Initializing /data/brian/images/RED.PCT: [testng] [2025-03-07 01:17:03,128] [pool-1-thread-10] Initializing /data/misc/planet.pict: [testng] [2025-03-07 01:17:03,721] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B32.pct: [testng] [2025-03-07 01:17:04,255] [pool-1-thread-6] Initializing /data/jqd/sixteenBit.pict: [testng] [2025-03-07 01:17:04,760] [pool-1-thread-7] Initializing /data/brian/images/BLK.PCT: [testng] [2025-03-07 01:17:05,279] [pool-1-thread-12] Initializing /data/jqd/mireSixteen.pict: [testng] [2025-03-07 01:17:05,730] [pool-1-thread-2] Initializing /data/misc/swlogo.pict: [testng] [2025-03-07 01:17:06,230] [pool-1-thread-4] Initializing /data/jqd/32bit.pict: [testng] [2025-03-07 01:17:06,826] [pool-1-thread-9] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [2025-03-07 01:17:07,288] [pool-1-thread-5] Initializing /data/brian/images/TRU256.PCT: [testng] [2025-03-07 01:17:07,687] [pool-1-thread-8] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] [2025-03-07 01:17:10,498] [pool-1-thread-1] Initializing /data/brian/images/YEL.PCT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 44 seconds Finished: SUCCESS