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Started by upstream project "BIOFORMATS-test-repo" build number 367 originally caused by: Started by upstream project "Trigger" build number 393 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins4310737222638506344.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58547_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:56:10,777 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 02:56:10,779 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 02:56:10,779 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:56:10,780 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:56:10,780 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:56:10,780 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:56:10,780 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:56:10,780 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:56:10,781 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:56:10,781 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:56:10,781 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:56:10,781 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:56:10,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:56:10,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:56:11,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:56:11,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:56:11,034 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:56:11,034 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:56:11,034 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:56:11,034 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:56:11,035 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 02:56:11,035 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 02:56:11,035 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 254 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-07 02:56:11,045] [main] java.version = 1.8.0_342 [testng] 02:56:11,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:56:11,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:56:11,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-07_02-56-11.log] [testng] 02:56:11,093 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-07 02:56:11,095] [main] testng.directory = /data [testng] [2025-03-07 02:56:11,095] [main] testng.configDirectory = /config [testng] [2025-03-07 02:56:11,108] [main] testng.multiplier = 1.0 [testng] [2025-03-07 02:56:11,108] [main] testng.in-memory = false [testng] [2025-03-07 02:56:11,108] [main] testng.allow-missing = false [testng] [2025-03-07 02:56:11,108] [main] user.language = en [testng] [2025-03-07 02:56:11,108] [main] user.country = ${user.country} [testng] [2025-03-07 02:56:11,108] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-07 03:02:15,546] [main] ---------------------------------------- [testng] [2025-03-07 03:02:15,546] [main] Total files: 268 [testng] [2025-03-07 03:02:15,546] [main] Scan time: 364.438 s (1359 ms/file) [testng] [2025-03-07 03:02:15,546] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-07 03:10:28,397] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] 03:10:28,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:10:28,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:10:28,399 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-07_03-10-28.log] [testng] 03:10:28,400 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50c87e23 - End of configuration. [testng] [2025-03-07 03:10:30,575] [pool-1-thread-12] Initializing /data/steve/TIFF/ta269 TIFF: [testng] 03:10:30,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:10:30,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:10:30,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-07_03-10-30.log] [testng] 03:10:30,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@271393c9 - End of configuration. [testng] [2025-03-07 03:10:36,641] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] 03:10:36,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:10:36,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:10:36,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-07_03-10-36.log] [testng] 03:10:36,643 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49241db0 - End of configuration. [testng] [2025-03-07 03:10:38,358] [pool-1-thread-10] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] 03:10:38,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:10:38,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:10:38,358 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-07_03-10-38.log] [testng] 03:10:38,359 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cc7f647 - End of configuration. [testng] [2025-03-07 03:10:40,116] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] 03:10:40,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:10:40,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:10:40,116 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-07_03-10-40.log] [testng] 03:10:40,117 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bf0f46d - End of configuration. [testng] [2025-03-07 03:10:42,922] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] 03:10:42,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:10:42,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:10:42,922 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-07_03-10-42.log] [testng] 03:10:42,923 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dd235e9 - End of configuration. [testng] [2025-03-07 03:10:47,940] [pool-1-thread-7] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] 03:10:47,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:10:47,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:10:47,941 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-07_03-10-47.log] [testng] 03:10:47,941 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10f461a0 - End of configuration. [testng] [2025-03-07 03:10:51,137] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] 03:10:51,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:10:51,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:10:51,138 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-07_03-10-51.log] [testng] 03:10:51,139 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4525e437 - End of configuration. [testng] [2025-03-07 03:10:52,094] [pool-1-thread-5] Initializing /data/steve/FITS/M13.fits: [testng] 03:10:52,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:10:52,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:10:52,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-07_03-10-52.log] [testng] 03:10:52,095 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32ecb8e5 - End of configuration. [testng] [2025-03-07 03:10:52,296] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] 03:10:52,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:10:52,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:10:52,297 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-07_03-10-52.log] [testng] 03:10:52,297 |-INFO in ch.qos.logback.core.sift.SiftProcessor@625d3e37 - End of configuration. [testng] [2025-03-07 03:10:55,379] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] 03:10:55,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:10:55,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:10:55,380 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-07_03-10-55.log] [testng] 03:10:55,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@792fc2eb - End of configuration. [testng] [2025-03-07 03:10:56,123] [pool-1-thread-2] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] 03:10:56,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:10:56,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:10:56,124 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-07_03-10-56.log] [testng] 03:10:56,124 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bafdb37 - End of configuration. [testng] [2025-03-07 03:11:03,287] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2025-03-07 03:11:07,406] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2025-03-07 03:11:09,993] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2025-03-07 03:11:11,805] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2025-03-07 03:11:13,175] [pool-1-thread-11] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2025-03-07 03:11:16,508] [pool-1-thread-10] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2025-03-07 03:11:22,953] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2025-03-07 03:11:28,621] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2025-03-07 03:11:33,928] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2025-03-07 03:11:39,283] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2025-03-07 03:11:44,553] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2025-03-07 03:11:45,787] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2025-03-07 03:11:46,551] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2025-03-07 03:11:47,513] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2025-03-07 03:11:51,796] [pool-1-thread-8] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2025-03-07 03:11:56,918] [pool-1-thread-4] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2025-03-07 03:12:01,556] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2025-03-07 03:12:02,556] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2025-03-07 03:12:09,807] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2025-03-07 03:12:11,631] [pool-1-thread-6] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2025-03-07 03:12:14,273] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2025-03-07 03:12:17,499] [pool-1-thread-12] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2025-03-07 03:12:20,601] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2025-03-07 03:12:21,012] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2025-03-07 03:12:21,662] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2025-03-07 03:12:24,996] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2025-03-07 03:12:31,582] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2025-03-07 03:12:38,883] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2025-03-07 03:12:40,760] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2025-03-07 03:12:45,577] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2025-03-07 03:12:46,905] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2025-03-07 03:12:48,703] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2025-03-07 03:12:50,415] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2025-03-07 03:12:57,540] [pool-1-thread-7] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2025-03-07 03:13:03,598] [pool-1-thread-9] Initializing /data/steve/FITS/M104.fits: [testng] [2025-03-07 03:13:05,317] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2025-03-07 03:13:11,472] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2025-03-07 03:13:13,536] [pool-1-thread-4] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2025-03-07 03:13:14,650] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2025-03-07 03:13:15,695] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2025-03-07 03:13:17,654] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2025-03-07 03:13:19,358] [pool-1-thread-10] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2025-03-07 03:13:19,857] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2025-03-07 03:13:22,369] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2025-03-07 03:13:24,293] [pool-1-thread-9] Initializing /data/steve/FITS/M51.fits: [testng] [2025-03-07 03:13:28,567] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2025-03-07 03:13:32,566] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2025-03-07 03:13:35,151] [pool-1-thread-9] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2025-03-07 03:13:38,537] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2025-03-07 03:13:40,346] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2025-03-07 03:13:46,312] [pool-1-thread-8] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2025-03-07 03:13:47,678] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2025-03-07 03:13:50,430] [pool-1-thread-12] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2025-03-07 03:13:53,156] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2025-03-07 03:13:57,037] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2025-03-07 03:13:58,645] [pool-1-thread-7] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2025-03-07 03:14:03,377] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2025-03-07 03:14:07,401] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2025-03-07 03:14:11,891] [pool-1-thread-4] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2025-03-07 03:14:13,690] [pool-1-thread-10] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2025-03-07 03:14:16,502] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2025-03-07 03:14:18,586] [pool-1-thread-9] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2025-03-07 03:14:20,151] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2025-03-07 03:14:29,564] [pool-1-thread-6] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2025-03-07 03:14:35,856] [pool-1-thread-5] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2025-03-07 03:14:40,174] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2025-03-07 03:14:42,145] [pool-1-thread-4] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2025-03-07 03:14:44,062] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2025-03-07 03:14:50,489] [pool-1-thread-3] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2025-03-07 03:14:56,312] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2025-03-07 03:14:58,091] [pool-1-thread-10] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2025-03-07 03:14:59,070] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2025-03-07 03:15:04,885] [pool-1-thread-7] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2025-03-07 03:15:06,719] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2025-03-07 03:15:11,206] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2025-03-07 03:15:15,969] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2025-03-07 03:15:19,585] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2025-03-07 03:15:20,511] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2025-03-07 03:15:21,422] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2025-03-07 03:15:24,702] [pool-1-thread-8] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2025-03-07 03:15:29,358] [pool-1-thread-6] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2025-03-07 03:15:36,418] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2025-03-07 03:15:38,414] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2025-03-07 03:15:41,031] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2025-03-07 03:15:43,700] [pool-1-thread-11] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2025-03-07 03:15:46,829] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2025-03-07 03:15:49,508] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2025-03-07 03:15:51,148] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2025-03-07 03:15:54,326] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2025-03-07 03:16:00,870] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2025-03-07 03:16:03,930] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2025-03-07 03:16:12,399] [pool-1-thread-1] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2025-03-07 03:16:18,469] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2025-03-07 03:16:19,455] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2025-03-07 03:16:21,957] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2025-03-07 03:16:27,811] [pool-1-thread-6] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2025-03-07 03:16:30,111] [pool-1-thread-11] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2025-03-07 03:16:35,334] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2025-03-07 03:16:37,716] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2025-03-07 03:16:39,677] [pool-1-thread-10] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2025-03-07 03:16:44,639] [pool-1-thread-8] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2025-03-07 03:16:48,530] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2025-03-07 03:16:49,439] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2025-03-07 03:16:51,657] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2025-03-07 03:16:55,541] [pool-1-thread-7] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2025-03-07 03:16:57,049] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2025-03-07 03:16:57,894] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2025-03-07 03:16:58,348] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2025-03-07 03:16:59,711] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2025-03-07 03:17:00,372] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2025-03-07 03:17:00,862] [pool-1-thread-12] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2025-03-07 03:17:04,407] [pool-1-thread-2] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2025-03-07 03:17:05,484] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2025-03-07 03:17:06,145] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2025-03-07 03:17:15,381] [pool-1-thread-1] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2025-03-07 03:17:22,750] [pool-1-thread-3] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2025-03-07 03:17:25,764] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2025-03-07 03:17:28,709] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2025-03-07 03:17:29,842] [pool-1-thread-8] Initializing /data/steve/Targa/Test.TGA: [testng] [2025-03-07 03:17:31,561] [pool-1-thread-11] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2025-03-07 03:17:36,320] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2025-03-07 03:17:40,475] [pool-1-thread-7] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2025-03-07 03:17:41,749] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2025-03-07 03:17:44,364] [pool-1-thread-5] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2025-03-07 03:17:49,497] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2025-03-07 03:17:51,498] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2025-03-07 03:18:00,075] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2025-03-07 03:18:02,816] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2025-03-07 03:18:04,389] [pool-1-thread-7] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2025-03-07 03:18:04,865] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2025-03-07 03:18:06,311] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2025-03-07 03:18:07,520] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2025-03-07 03:18:09,951] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2025-03-07 03:18:12,432] [pool-1-thread-1] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2025-03-07 03:18:15,582] [pool-1-thread-12] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2025-03-07 03:18:18,450] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2025-03-07 03:18:19,857] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2025-03-07 03:18:20,830] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2025-03-07 03:18:22,535] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2025-03-07 03:18:23,760] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2025-03-07 03:18:24,679] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2025-03-07 03:18:25,734] [pool-1-thread-5] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2025-03-07 03:18:28,524] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2025-03-07 03:18:30,365] [pool-1-thread-1] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2025-03-07 03:18:31,239] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2025-03-07 03:18:33,758] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2025-03-07 03:18:39,758] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2025-03-07 03:18:41,369] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 22 minutes 58 seconds Finished: SUCCESS