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Started by upstream project "BIOFORMATS-test-repo" build number 367 originally caused by: Started by upstream project "Trigger" build number 393 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins7712087057400421290.sh + '[' analyze = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58571_merge_ci -v /uod/idr/repos/curated/analyze:/data -v /uod/idr-scratch/merge-ci/curated/analyze:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 06:40:57,728 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 06:40:57,730 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 06:40:57,730 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:40:57,730 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:40:57,731 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:40:57,731 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:40:57,731 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:40:57,731 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:40:57,731 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:40:57,732 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:40:57,732 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:40:57,732 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:40:57,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:40:57,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:40:57,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:40:57,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:40:57,973 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:40:57,973 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:40:57,973 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:40:57,974 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:40:57,974 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 06:40:57,975 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 06:40:57,975 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 244 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-07 06:40:57,984] [main] java.version = 1.8.0_342 [testng] 06:40:57,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:40:57,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:40:58,030 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-07_06-40-58.log] [testng] 06:40:58,031 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-07 06:40:58,033] [main] testng.directory = /data [testng] [2025-03-07 06:40:58,033] [main] testng.configDirectory = /config [testng] [2025-03-07 06:40:58,045] [main] testng.multiplier = 1.0 [testng] [2025-03-07 06:40:58,045] [main] testng.in-memory = false [testng] [2025-03-07 06:40:58,045] [main] testng.allow-missing = false [testng] [2025-03-07 06:40:58,045] [main] user.language = en [testng] [2025-03-07 06:40:58,045] [main] user.country = ${user.country} [testng] [2025-03-07 06:40:58,045] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-07 06:41:34,904] [main] ---------------------------------------- [testng] [2025-03-07 06:41:34,904] [main] Total files: 21 [testng] [2025-03-07 06:41:34,904] [main] Scan time: 36.859 s (1755 ms/file) [testng] [2025-03-07 06:41:34,905] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-07 06:42:18,778] [pool-1-thread-1] Initializing /data/frans/Test Files for Frans/PLA-zm2-16mm_1002_MF_V1.hdr: [testng] 06:42:18,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:42:18,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:42:18,780 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-07_06-42-18.log] [testng] 06:42:18,780 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cbd3f67 - End of configuration. [testng] [2025-03-07 06:42:20,572] [pool-1-thread-12] Initializing /data/frans/CT_HAND.hdr: [testng] 06:42:20,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:42:20,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:42:20,573 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-07_06-42-20.log] [testng] 06:42:20,573 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3feee241 - End of configuration. [testng] [2025-03-07 06:42:22,624] [pool-1-thread-11] Initializing /data/frans/brodmann.hdr: [testng] 06:42:22,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:42:22,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:42:22,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-07_06-42-22.log] [testng] 06:42:22,626 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72ba8c68 - End of configuration. [testng] [2025-03-07 06:42:24,659] [pool-1-thread-10] Initializing /data/frans/aal.hdr: [testng] 06:42:24,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:42:24,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:42:24,660 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-07_06-42-24.log] [testng] 06:42:24,660 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f6e3595 - End of configuration. [testng] [2025-03-07 06:42:26,686] [pool-1-thread-9] Initializing /data/frans/Test Files for Frans/06-101-mask-40pc2dil.hdr: [testng] 06:42:26,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:42:26,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:42:26,687 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-07_06-42-26.log] [testng] 06:42:26,687 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dfaf1cf - End of configuration. [testng] [2025-03-07 06:42:28,837] [pool-1-thread-8] Initializing /data/frans/Test Files for Frans/200-PLA_sansBD_spmT_0005.hdr: [testng] 06:42:28,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:42:28,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:42:28,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-07_06-42-28.log] [testng] 06:42:28,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d301c68 - End of configuration. [testng] [2025-03-07 06:42:30,825] [pool-1-thread-7] Initializing /data/frans/betmask.hdr: [testng] 06:42:30,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:42:30,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:42:30,826 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-07_06-42-30.log] [testng] 06:42:30,826 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38a49bf8 - End of configuration. [testng] [2025-03-07 06:42:32,942] [pool-1-thread-6] Initializing /data/frans/CT_WHOLE.hdr: [testng] 06:42:32,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:42:32,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:42:32,943 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-07_06-42-32.log] [testng] 06:42:32,944 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fd3d5e1 - End of configuration. [testng] [2025-03-07 06:42:35,028] [pool-1-thread-5] Initializing /data/frans/MR_SEGBRAIN.hdr: [testng] 06:42:35,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:42:35,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:42:35,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-07_06-42-35.log] [testng] 06:42:35,029 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6981f452 - End of configuration. [testng] [2025-03-07 06:42:37,116] [pool-1-thread-4] Initializing /data/frans/CT_FOOT.hdr: [testng] 06:42:37,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:42:37,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:42:37,117 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-07_06-42-37.log] [testng] 06:42:37,118 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16fd7289 - End of configuration. [testng] [2025-03-07 06:42:38,813] [pool-1-thread-3] Initializing /data/frans/ch2bet.hdr: [testng] 06:42:38,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:42:38,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:42:38,814 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-07_06-42-38.log] [testng] 06:42:38,825 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c28c901 - End of configuration. [testng] [2025-03-07 06:42:41,096] [pool-1-thread-2] Initializing /data/frans/MR_CHEST.hdr: [testng] 06:42:41,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:42:41,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:42:41,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-07_06-42-41.log] [testng] 06:42:41,097 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28a7c1a9 - End of configuration. [testng] [2025-03-07 06:43:03,274] [pool-1-thread-1] Initializing /data/frans/CT_CRANI.hdr: [testng] [2025-03-07 06:43:05,407] [pool-1-thread-5] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1.img.hdr: [testng] [2025-03-07 06:43:07,566] [pool-1-thread-2] Initializing /data/frans/CT_KNEE.hdr: [testng] [2025-03-07 06:43:09,513] [pool-1-thread-11] Initializing /data/frans/m000-MR_CHEST.gif: [testng] [2025-03-07 06:43:09,941] [pool-1-thread-12] Initializing /data/frans/CT_APERT.hdr: [testng] [2025-03-07 06:43:12,379] [pool-1-thread-4] Initializing /data/frans/CT_CHEST.hdr: [testng] [2025-03-07 06:43:14,520] [pool-1-thread-9] Initializing /data/frans/Test Files for Frans/F005_1002_MF_SCAN1_stat_brain_fdg_JJ_Volume_Corrected.hdr: [testng] [2025-03-07 06:43:16,613] [pool-1-thread-7] Initializing /data/frans/ch2.hdr: [testng] [2025-03-07 06:43:18,742] [pool-1-thread-8] Initializing /data/frans/Test Files for Frans/1002-sag-transform-box-est_flip-ord.hdr: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 45 seconds Finished: SUCCESS