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Started by upstream project "BIOFORMATS-test-repo" build number 367 originally caused by: Started by upstream project "Trigger" build number 393 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins12882799946424809036.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58592_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 09:18:19,705 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 09:18:19,707 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 09:18:19,707 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:18:19,708 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:18:19,708 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 09:18:19,708 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 09:18:19,708 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 09:18:19,708 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:18:19,709 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:18:19,709 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 09:18:19,709 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 09:18:19,709 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 09:18:19,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:18:19,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:18:19,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:18:19,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:18:19,962 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:18:19,963 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:18:19,963 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:18:19,963 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:18:19,963 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 09:18:19,964 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 09:18:19,964 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 255 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-07 09:18:19,973] [main] java.version = 1.8.0_342 [testng] 09:18:19,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:18:19,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:18:20,021 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-07_09-18-19.log] [testng] 09:18:20,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-07 09:18:20,024] [main] testng.directory = /data [testng] [2025-03-07 09:18:20,024] [main] testng.configDirectory = /config [testng] [2025-03-07 09:18:20,036] [main] testng.multiplier = 1.0 [testng] [2025-03-07 09:18:20,036] [main] testng.in-memory = false [testng] [2025-03-07 09:18:20,036] [main] testng.allow-missing = false [testng] [2025-03-07 09:18:20,036] [main] user.language = en [testng] [2025-03-07 09:18:20,036] [main] user.country = ${user.country} [testng] [2025-03-07 09:18:20,036] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-07 09:18:27,359] [main] ---------------------------------------- [testng] [2025-03-07 09:18:27,360] [main] Total files: 32 [testng] [2025-03-07 09:18:27,360] [main] Scan time: 7.323 s (228 ms/file) [testng] [2025-03-07 09:18:27,360] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-07 09:19:27,517] [pool-1-thread-1] Initializing /data/geert/bad example1.1sc: [testng] 09:19:27,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:19:27,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:19:27,518 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-07_09-19-27.log] [testng] 09:19:27,519 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f1e7bab - End of configuration. [testng] [2025-03-07 09:19:28,821] [pool-1-thread-12] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] 09:19:28,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:19:28,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:19:28,822 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-07_09-19-28.log] [testng] 09:19:28,823 |-INFO in ch.qos.logback.core.sift.SiftProcessor@775c3e18 - End of configuration. [testng] [2025-03-07 09:19:32,910] [pool-1-thread-11] Initializing /data/keith/pg020410saur3.1sc: [testng] 09:19:32,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:19:32,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:19:32,911 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-07_09-19-32.log] [testng] 09:19:32,911 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d1c5c8d - End of configuration. [testng] [2025-03-07 09:19:34,030] [pool-1-thread-10] Initializing /data/geert/good example1.1sc.jpg: [testng] 09:19:34,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:19:34,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:19:34,031 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-07_09-19-34.log] [testng] 09:19:34,031 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5153150a - End of configuration. [testng] [2025-03-07 09:19:34,442] [pool-1-thread-9] Initializing /data/david/Opened in imageJ.tiff: [testng] 09:19:34,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:19:34,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:19:34,443 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-07_09-19-34.log] [testng] 09:19:34,443 |-INFO in ch.qos.logback.core.sift.SiftProcessor@183ebd8a - End of configuration. [testng] [2025-03-07 09:19:38,934] [pool-1-thread-8] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] 09:19:38,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:19:38,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:19:38,936 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-07_09-19-38.log] [testng] 09:19:38,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64dacc19 - End of configuration. [testng] [2025-03-07 09:19:42,800] [pool-1-thread-7] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] 09:19:42,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:19:42,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:19:42,801 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-07_09-19-42.log] [testng] 09:19:42,801 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30e3d0f8 - End of configuration. [testng] [2025-03-07 09:19:43,956] [pool-1-thread-6] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] 09:19:43,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:19:43,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:19:43,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-07_09-19-43.log] [testng] 09:19:43,958 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ebe790a - End of configuration. [testng] [2025-03-07 09:19:45,252] [pool-1-thread-5] Initializing /data/samples/Criterion.1sc: [testng] 09:19:45,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:19:45,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:19:45,253 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-07_09-19-45.log] [testng] 09:19:45,253 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5af957ef - End of configuration. [testng] [2025-03-07 09:19:46,573] [pool-1-thread-4] Initializing /data/adrian/test_img.1sc: [testng] 09:19:46,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:19:46,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:19:46,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-07_09-19-46.log] [testng] 09:19:46,574 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ae17e0f - End of configuration. [testng] [2025-03-07 09:19:47,455] [pool-1-thread-3] Initializing /data/samples/imagesEight.1sc: [testng] 09:19:47,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:19:47,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:19:47,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-07_09-19-47.log] [testng] 09:19:47,456 |-INFO in ch.qos.logback.core.sift.SiftProcessor@411186ee - End of configuration. [testng] [2025-03-07 09:19:48,062] [pool-1-thread-2] Initializing /data/qa-29469/bad3.1sc: [testng] 09:19:48,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:19:48,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:19:48,063 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-07_09-19-48.log] [testng] 09:19:48,063 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4987df40 - End of configuration. [testng] [2025-03-07 09:19:57,961] [pool-1-thread-3] Initializing /data/qa-29459/bad.jpg: [testng] [2025-03-07 09:19:58,295] [pool-1-thread-11] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] [2025-03-07 09:20:02,165] [pool-1-thread-7] Initializing /data/qa-29469/bad2.1sc: [testng] [2025-03-07 09:20:03,386] [pool-1-thread-1] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] [2025-03-07 09:20:04,526] [pool-1-thread-4] Initializing /data/geert/good example1.1sc: [testng] [2025-03-07 09:20:05,502] [pool-1-thread-2] Initializing /data/keith/test2.1sc: [testng] [2025-03-07 09:20:06,465] [pool-1-thread-10] Initializing /data/keith/PF020328saur v3.1sc: [testng] [2025-03-07 09:20:07,864] [pool-1-thread-6] Initializing /data/geert/bad example1.1sc.jpg: [testng] [2025-03-07 09:20:08,250] [pool-1-thread-5] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] [2025-03-07 09:20:18,723] [pool-1-thread-10] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] [2025-03-07 09:20:23,420] [pool-1-thread-1] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] [2025-03-07 09:20:27,993] [pool-1-thread-7] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] [2025-03-07 09:20:29,164] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] [2025-03-07 09:20:30,248] [pool-1-thread-4] Initializing /data/qa-29459/bad.1sc: [testng] [2025-03-07 09:20:31,150] [pool-1-thread-12] Initializing /data/keith/test.1sc: [testng] [2025-03-07 09:20:32,228] [pool-1-thread-8] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] [2025-03-07 09:20:33,423] [pool-1-thread-9] Initializing /data/qa-16880/c-src v7.1sc: [testng] [2025-03-07 09:20:34,508] [pool-1-thread-6] Initializing /data/geert/bad example1.jpg: [testng] [2025-03-07 09:20:34,893] [pool-1-thread-5] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] [2025-03-07 09:20:38,341] [pool-1-thread-3] Initializing /data/qa-29469/good.1sc: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 47 seconds Finished: SUCCESS