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Started by upstream project "BIOFORMATS-test-repo" build number 368 originally caused by: Started by upstream project "Trigger" build number 394 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins4669362186890188700.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58605_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:19:00,964 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:19:00,966 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 00:19:00,966 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:19:00,967 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:19:00,967 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:19:00,968 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:19:00,968 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:19:00,968 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:19:00,969 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:19:00,969 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:19:00,970 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:19:00,970 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:19:01,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:19:01,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:19:01,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:19:01,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:19:01,187 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:19:01,187 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:19:01,187 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:19:01,188 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:19:01,188 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 00:19:01,189 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 00:19:01,189 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 220 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-08 00:19:01,198] [main] java.version = 11.0.16 [testng] 00:19:01,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:19:01,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:19:01,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-08_00-19-01.log] [testng] 00:19:01,249 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-08 00:19:01,251] [main] testng.directory = /data [testng] [2025-03-08 00:19:01,251] [main] testng.configDirectory = /config [testng] [2025-03-08 00:19:01,262] [main] testng.multiplier = 1.0 [testng] [2025-03-08 00:19:01,263] [main] testng.in-memory = false [testng] [2025-03-08 00:19:01,263] [main] testng.allow-missing = false [testng] [2025-03-08 00:19:01,263] [main] user.language = en [testng] [2025-03-08 00:19:01,263] [main] user.country = ${user.country} [testng] [2025-03-08 00:19:01,263] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-08 00:20:54,206] [main] ---------------------------------------- [testng] [2025-03-08 00:20:54,206] [main] Total files: 36 [testng] [2025-03-08 00:20:54,206] [main] Scan time: 112.943 s (3137 ms/file) [testng] [2025-03-08 00:20:54,207] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-08 00:29:57,014] [pool-1-thread-1] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] 00:29:57,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:29:57,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:57,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-08_00-29-57.log] [testng] 00:29:57,020 |-INFO in ch.qos.logback.core.sift.SiftProcessor@323bf090 - End of configuration. [testng] [2025-03-08 00:30:07,830] [pool-1-thread-12] Initializing /data/generated/mri-stack7.pcx: [testng] 00:30:07,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:30:07,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:07,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-08_00-30-07.log] [testng] 00:30:07,832 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c40cea9 - End of configuration. [testng] [2025-03-08 00:30:18,861] [pool-1-thread-11] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] 00:30:18,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:30:18,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:18,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-08_00-30-18.log] [testng] 00:30:18,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e1fe5c5 - End of configuration. [testng] [2025-03-08 00:30:22,697] [pool-1-thread-10] Initializing /data/generated/mri-stack4.pcx: [testng] 00:30:22,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:30:22,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:22,698 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-08_00-30-22.log] [testng] 00:30:22,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b2a7d18 - End of configuration. [testng] [2025-03-08 00:30:26,427] [pool-1-thread-9] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] 00:30:26,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:30:26,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:26,427 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-08_00-30-26.log] [testng] 00:30:26,428 |-INFO in ch.qos.logback.core.sift.SiftProcessor@105f67d1 - End of configuration. [testng] [2025-03-08 00:30:31,710] [pool-1-thread-8] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] 00:30:31,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:30:31,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:31,711 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-08_00-30-31.log] [testng] 00:30:31,712 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6aa5e6a8 - End of configuration. [testng] [2025-03-08 00:30:55,514] [pool-1-thread-7] Initializing /data/generated/mri-stack25.pcx: [testng] 00:30:55,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:30:55,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:55,515 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-08_00-30-55.log] [testng] 00:30:55,516 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56ebccfb - End of configuration. [testng] [2025-03-08 00:31:18,863] [pool-1-thread-6] Initializing /data/generated/mri-stack6.pcx: [testng] 00:31:18,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:31:18,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:18,864 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-08_00-31-18.log] [testng] 00:31:18,864 |-INFO in ch.qos.logback.core.sift.SiftProcessor@671ff381 - End of configuration. [testng] [2025-03-08 00:31:41,340] [pool-1-thread-5] Initializing /data/generated/mri-stack26.pcx: [testng] 00:31:41,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:31:41,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:41,341 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-08_00-31-41.log] [testng] 00:31:41,342 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ea901f - End of configuration. [testng] [2025-03-08 00:31:55,083] [pool-1-thread-4] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] 00:31:55,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:31:55,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:55,084 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-08_00-31-55.log] [testng] 00:31:55,085 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19b5ff60 - End of configuration. [testng] [2025-03-08 00:32:01,839] [pool-1-thread-3] Initializing /data/generated/mri-stack20.pcx: [testng] 00:32:01,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:32:01,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:01,840 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-08_00-32-01.log] [testng] 00:32:01,840 |-INFO in ch.qos.logback.core.sift.SiftProcessor@760a5ccb - End of configuration. [testng] [2025-03-08 00:32:13,107] [pool-1-thread-2] Initializing /data/generated/mri-stack22.pcx: [testng] 00:32:13,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:32:13,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:13,108 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-08_00-32-13.log] [testng] 00:32:13,109 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7239624e - End of configuration. [testng] [2025-03-08 00:34:22,730] [pool-1-thread-6] Initializing /data/generated/mri-stack1.pcx: [testng] [2025-03-08 00:34:32,705] [pool-1-thread-4] Initializing /data/generated/mri-stack18.pcx: [testng] [2025-03-08 00:34:41,767] [pool-1-thread-9] Initializing /data/generated/mri-stack19.pcx: [testng] [2025-03-08 00:34:50,249] [pool-1-thread-1] Initializing /data/generated/mri-stack15.pcx: [testng] [2025-03-08 00:34:53,310] [pool-1-thread-12] Initializing /data/generated/mri-stack10.pcx: [testng] [2025-03-08 00:34:56,581] [pool-1-thread-5] Initializing /data/generated/mri-stack8.pcx: [testng] [2025-03-08 00:35:01,588] [pool-1-thread-3] Initializing /data/generated/mri-stack2.pcx: [testng] [2025-03-08 00:35:11,673] [pool-1-thread-2] Initializing /data/generated/mri-stack24.pcx: [testng] [2025-03-08 00:35:21,736] [pool-1-thread-7] Initializing /data/generated/mri-stack3.pcx: [testng] [2025-03-08 00:35:30,910] [pool-1-thread-10] Initializing /data/generated/mri-stack17.pcx: [testng] [2025-03-08 00:35:40,569] [pool-1-thread-11] Initializing /data/generated/mri-stack13.pcx: [testng] [2025-03-08 00:35:49,726] [pool-1-thread-8] Initializing /data/generated/mri-stack11.pcx: [testng] [2025-03-08 00:37:38,782] [pool-1-thread-6] Initializing /data/generated/mri-stack23.pcx: [testng] [2025-03-08 00:37:48,897] [pool-1-thread-8] Initializing /data/generated/mri-stack16.pcx: [testng] [2025-03-08 00:37:52,329] [pool-1-thread-4] Initializing /data/generated/mri-stack9.pcx: [testng] [2025-03-08 00:37:55,791] [pool-1-thread-9] Initializing /data/generated/mri-stack14.pcx: [testng] [2025-03-08 00:38:03,851] [pool-1-thread-5] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2025-03-08 00:38:12,668] [pool-1-thread-10] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2025-03-08 00:38:21,205] [pool-1-thread-11] Initializing /data/generated/mri-stack0.pcx: [testng] [2025-03-08 00:38:28,975] [pool-1-thread-12] Initializing /data/generated/mri-stack5.pcx: [testng] [2025-03-08 00:38:35,629] [pool-1-thread-7] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2025-03-08 00:38:42,729] [pool-1-thread-2] Initializing /data/generated/mri-stack21.pcx: [testng] [2025-03-08 00:38:49,937] [pool-1-thread-3] Initializing /data/generated/mri-stack12.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 minutes 12 seconds Finished: SUCCESS