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Started by upstream project "BIOFORMATS-test-repo" build number 368 originally caused by: Started by upstream project "Trigger" build number 394 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins16416114729809711194.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58621_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:26:06,420 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 02:26:06,421 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 02:26:06,421 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:26:06,422 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:26:06,423 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:26:06,423 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:26:06,424 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:26:06,424 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:26:06,424 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:26:06,425 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:26:06,425 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:26:06,425 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:26:06,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:26:06,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:26:06,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:26:06,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:26:06,618 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:26:06,618 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:26:06,618 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:26:06,619 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:26:06,619 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 02:26:06,620 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 02:26:06,620 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-08 02:26:06,629] [main] java.version = 11.0.16 [testng] 02:26:06,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:26:06,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:06,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-08_02-26-06.log] [testng] 02:26:06,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-08 02:26:06,677] [main] testng.directory = /data [testng] [2025-03-08 02:26:06,677] [main] testng.configDirectory = /config [testng] [2025-03-08 02:26:06,689] [main] testng.multiplier = 1.0 [testng] [2025-03-08 02:26:06,691] [main] testng.in-memory = false [testng] [2025-03-08 02:26:06,692] [main] testng.allow-missing = false [testng] [2025-03-08 02:26:06,692] [main] user.language = en [testng] [2025-03-08 02:26:06,692] [main] user.country = ${user.country} [testng] [2025-03-08 02:26:06,692] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-08 02:54:35,861] [main] ---------------------------------------- [testng] [2025-03-08 02:54:35,861] [main] Total files: 21 [testng] [2025-03-08 02:54:35,861] [main] Scan time: 1709.169 s (81389 ms/file) [testng] [2025-03-08 02:54:35,861] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-08 03:44:39,905] [pool-1-thread-1] Initializing /data/stefan/001_q12.txt: [testng] 03:44:39,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:44:39,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:44:39,907 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-08_03-44-39.log] [testng] 03:44:39,908 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f232f24 - End of configuration. [testng] [2025-03-08 03:48:10,010] [pool-1-thread-12] Initializing /data/stefan/001_q18.txt: [testng] 03:48:10,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:48:10,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:48:10,012 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-08_03-48-10.log] [testng] 03:48:10,012 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50a15581 - End of configuration. [testng] [2025-03-08 03:50:00,960] [pool-1-thread-11] Initializing /data/stefan/001_q07.txt: [testng] 03:50:00,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:50:00,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:50:00,961 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-08_03-50-00.log] [testng] 03:50:00,962 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cfb85de - End of configuration. [testng] [2025-03-08 03:54:06,660] [pool-1-thread-10] Initializing /data/stefan/001_q13.txt: [testng] 03:54:06,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:54:06,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:54:06,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-08_03-54-06.log] [testng] 03:54:06,661 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ab18ff7 - End of configuration. [testng] [2025-03-08 03:56:28,161] [pool-1-thread-9] Initializing /data/stefan/001_q08.txt: [testng] 03:56:28,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:56:28,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:56:28,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-08_03-56-28.log] [testng] 03:56:28,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35684f3a - End of configuration. [testng] [2025-03-08 04:01:06,144] [pool-1-thread-8] Initializing /data/stefan/001_q01.txt: [testng] 04:01:06,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:01:06,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:01:06,145 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-08_04-01-06.log] [testng] 04:01:06,146 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a0a49fa - End of configuration. [testng] [2025-03-08 04:03:22,441] [pool-1-thread-7] Initializing /data/stefan/001_q09.txt: [testng] 04:03:22,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:03:22,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:03:22,442 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-08_04-03-22.log] [testng] 04:03:22,442 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e0fbd05 - End of configuration. [testng] [2025-03-08 04:08:16,121] [pool-1-thread-6] Initializing /data/stefan/001_q03.txt: [testng] 04:08:16,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:08:16,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:16,122 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-08_04-08-16.log] [testng] 04:08:16,123 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e6f929b - End of configuration. [testng] [2025-03-08 04:10:26,557] [pool-1-thread-5] Initializing /data/stefan/001_q02.txt: [testng] 04:10:26,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:10:26,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:10:26,557 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-08_04-10-26.log] [testng] 04:10:26,558 |-INFO in ch.qos.logback.core.sift.SiftProcessor@244abbba - End of configuration. [testng] [2025-03-08 04:12:28,861] [pool-1-thread-4] Initializing /data/stefan/001_q11.txt: [testng] 04:12:28,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:12:28,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:12:28,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-08_04-12-28.log] [testng] 04:12:28,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78524a2f - End of configuration. [testng] [2025-03-08 04:16:38,404] [pool-1-thread-3] Initializing /data/stefan/001_q15.txt: [testng] 04:16:38,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:16:38,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:38,405 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-08_04-16-38.log] [testng] 04:16:38,406 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fb4087f - End of configuration. [testng] [2025-03-08 04:18:37,893] [pool-1-thread-2] Initializing /data/stefan/001_q17.txt: [testng] 04:18:37,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:18:37,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:18:37,894 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-08_04-18-37.log] [testng] 04:18:37,894 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68dac730 - End of configuration. [testng] [2025-03-08 04:43:31,495] [pool-1-thread-5] Initializing /data/stefan/001_q14.txt: [testng] [2025-03-08 04:46:01,282] [pool-1-thread-6] Initializing /data/stefan/001_q04.txt: [testng] [2025-03-08 04:48:24,886] [pool-1-thread-8] Initializing /data/stefan/001_q16.txt: [testng] [2025-03-08 04:50:36,124] [pool-1-thread-10] Initializing /data/stefan/001_q06.txt: [testng] [2025-03-08 04:52:55,942] [pool-1-thread-3] Initializing /data/stefan/001_q10.txt: [testng] [2025-03-08 04:59:22,154] [pool-1-thread-2] Initializing /data/stefan/001_q05.txt: [testng] 05:32:20,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:32:20,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:32:20,816 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-08_05-32-20.log] [testng] 05:32:20,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11f9535b - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 186 minutes 17 seconds Finished: SUCCESS