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Started by upstream project "BIOFORMATS-test-repo" build number 368 originally caused by: Started by upstream project "Trigger" build number 394 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins13292511232369370180.sh + '[' pict = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58656_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 19:37:28,931 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 19:37:28,933 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 19:37:28,933 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 19:37:28,934 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 19:37:28,934 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 19:37:28,935 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 19:37:28,935 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 19:37:28,935 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 19:37:28,935 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 19:37:28,936 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 19:37:28,936 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 19:37:28,937 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 19:37:29,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 19:37:29,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 19:37:29,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 19:37:29,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 19:37:29,129 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 19:37:29,130 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 19:37:29,130 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 19:37:29,130 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 19:37:29,130 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 19:37:29,131 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 19:37:29,131 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-08 19:37:29,140] [main] java.version = 11.0.16 [testng] 19:37:29,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 19:37:29,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:37:29,185 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-08_19-37-29.log] [testng] 19:37:29,186 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-08 19:37:29,188] [main] testng.directory = /data [testng] [2025-03-08 19:37:29,188] [main] testng.configDirectory = /config [testng] [2025-03-08 19:37:29,198] [main] testng.multiplier = 1.0 [testng] [2025-03-08 19:37:29,199] [main] testng.in-memory = false [testng] [2025-03-08 19:37:29,199] [main] testng.allow-missing = false [testng] [2025-03-08 19:37:29,199] [main] user.language = en [testng] [2025-03-08 19:37:29,199] [main] user.country = ${user.country} [testng] [2025-03-08 19:37:29,199] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-08 19:37:30,161] [main] ---------------------------------------- [testng] [2025-03-08 19:37:30,162] [main] Total files: 25 [testng] [2025-03-08 19:37:30,162] [main] Scan time: 0.962 s (38 ms/file) [testng] [2025-03-08 19:37:30,162] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-08 19:41:16,274] [pool-1-thread-1] Initializing /data/misc/planet2.pict: [testng] 19:41:16,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 19:41:16,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:41:16,277 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-08_19-41-16.log] [testng] 19:41:16,278 |-INFO in ch.qos.logback.core.sift.SiftProcessor@357f6cd3 - End of configuration. [testng] [2025-03-08 19:41:25,248] [pool-1-thread-12] Initializing /data/brian/images/FLAG_B32.pct: [testng] 19:41:25,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 19:41:25,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:41:25,249 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-08_19-41-25.log] [testng] 19:41:25,249 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b7c7325 - End of configuration. [testng] [2025-03-08 19:41:34,747] [pool-1-thread-11] Initializing /data/misc/planet.pict: [testng] 19:41:34,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 19:41:34,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:41:34,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-08_19-41-34.log] [testng] 19:41:34,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@665afd2 - End of configuration. [testng] [2025-03-08 19:41:45,193] [pool-1-thread-10] Initializing /data/brian/images/WHT.PCT: [testng] 19:41:45,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 19:41:45,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:41:45,194 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-08_19-41-45.log] [testng] 19:41:45,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c669ba1 - End of configuration. [testng] [2025-03-08 19:41:57,369] [pool-1-thread-9] Initializing /data/brian/images/GRN.PCT: [testng] 19:41:57,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 19:41:57,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:41:57,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-08_19-41-57.log] [testng] 19:41:57,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3204c140 - End of configuration. [testng] [2025-03-08 19:42:06,547] [pool-1-thread-8] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 19:42:06,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 19:42:06,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:42:06,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-08_19-42-06.log] [testng] 19:42:06,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4593b5ee - End of configuration. [testng] [2025-03-08 19:42:20,611] [pool-1-thread-7] Initializing /data/brian/images/VENUS.pct: [testng] 19:42:20,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 19:42:20,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:42:20,612 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-08_19-42-20.log] [testng] 19:42:20,612 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bb8fc17 - End of configuration. [testng] [2025-03-08 19:42:27,272] [pool-1-thread-6] Initializing /data/brian/images/FLAG_RGB.pct: [testng] 19:42:27,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 19:42:27,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:42:27,272 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-08_19-42-27.log] [testng] 19:42:27,273 |-INFO in ch.qos.logback.core.sift.SiftProcessor@116edaea - End of configuration. [testng] [2025-03-08 19:42:38,743] [pool-1-thread-5] Initializing /data/wayne/PotatoMeristem.pict: [testng] 19:42:38,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 19:42:38,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:42:38,744 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-08_19-42-38.log] [testng] 19:42:38,744 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2af77d17 - End of configuration. [testng] [2025-03-08 19:42:47,677] [pool-1-thread-4] Initializing /data/jqd/mire32.pict: [testng] 19:42:47,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 19:42:47,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:42:47,678 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-08_19-42-47.log] [testng] 19:42:47,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65f17f60 - End of configuration. [testng] [2025-03-08 19:42:58,381] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 19:42:58,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 19:42:58,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:42:58,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-08_19-42-58.log] [testng] 19:42:58,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a89bd66 - End of configuration. [testng] [2025-03-08 19:43:11,016] [pool-1-thread-2] Initializing /data/jqd/mireSixteen.pict: [testng] 19:43:11,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 19:43:11,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:43:11,017 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-08_19-43-11.log] [testng] 19:43:11,017 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10ec7b60 - End of configuration. [testng] [2025-03-08 19:43:52,952] [pool-1-thread-8] Initializing /data/brian/images/RED.PCT: [testng] [2025-03-08 19:43:57,861] [pool-1-thread-10] Initializing /data/misc/planet.png: [testng] [2025-03-08 19:43:59,007] [pool-1-thread-7] Initializing /data/brian/images/TRU256.PCT: [testng] [2025-03-08 19:44:05,253] [pool-1-thread-1] Initializing /data/brian/images/BLK.PCT: [testng] [2025-03-08 19:44:13,209] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2025-03-08 19:44:23,136] [pool-1-thread-5] Initializing /data/jqd/sixteenBit.pict: [testng] [2025-03-08 19:44:32,183] [pool-1-thread-2] Initializing /data/brian/images/YEL.PCT: [testng] [2025-03-08 19:44:43,390] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2025-03-08 19:44:54,977] [pool-1-thread-4] Initializing /data/jqd/32bit.pict: [testng] [2025-03-08 19:45:08,635] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] [2025-03-08 19:45:18,830] [pool-1-thread-9] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2025-03-08 19:45:24,954] [pool-1-thread-3] Initializing /data/misc/swlogo.pict: [testng] [2025-03-08 19:46:00,956] [pool-1-thread-10] Initializing /data/brian/images/BLU.PCT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 minutes 32 seconds Finished: SUCCESS