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Started by upstream project "BIOFORMATS-test-repo" build number 368 originally caused by: Started by upstream project "Trigger" build number 394 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins14404929977428022175.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58690_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [resolver:resolve] Resolving artifacts [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml compile-tests: [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [resolver:resolve] Resolving artifacts [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 06:06:12,619 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 06:06:12,620 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 06:06:12,620 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:06:12,621 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:06:12,622 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:06:12,622 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:06:12,622 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:06:12,622 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:06:12,623 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:06:12,623 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:06:12,624 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:06:12,624 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:06:12,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:06:12,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:06:12,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:06:12,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:06:12,836 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:06:12,836 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:06:12,836 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:06:12,836 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:06:12,836 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 06:06:12,837 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 06:06:12,837 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 214 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-09 06:06:12,848] [main] java.version = 11.0.16 [testng] 06:06:12,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:06:12,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:06:12,899 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-09_06-06-12.log] [testng] 06:06:12,901 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-09 06:06:12,903] [main] testng.directory = /data [testng] [2025-03-09 06:06:12,903] [main] testng.configDirectory = /config [testng] [2025-03-09 06:06:12,914] [main] testng.multiplier = 1.0 [testng] [2025-03-09 06:06:12,916] [main] testng.in-memory = false [testng] [2025-03-09 06:06:12,916] [main] testng.allow-missing = false [testng] [2025-03-09 06:06:12,916] [main] user.language = en [testng] [2025-03-09 06:06:12,916] [main] user.country = ${user.country} [testng] [2025-03-09 06:06:12,916] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-09 06:46:55,672] [main] ---------------------------------------- [testng] [2025-03-09 06:46:55,672] [main] Total files: 14121 [testng] [2025-03-09 06:46:55,672] [main] Scan time: 2442.756 s (172 ms/file) [testng] [2025-03-09 06:46:55,673] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 261 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-09 07:48:58,611] [pool-1-thread-1] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_Vec_ISOtoDA_4well/Dish6_w1FRET_s1_t1.TIF: [testng] 07:48:58,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:48:58,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:48:58,614 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-09_07-48-58.log] [testng] 07:48:58,615 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2201acc1 - End of configuration. [testng] [2025-03-09 07:49:23,241] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] 07:49:23,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:49:23,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:49:23,242 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-09_07-49-23.log] [testng] 07:49:23,242 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32e63b3e - End of configuration. [testng] [2025-03-09 07:49:27,177] [pool-1-thread-11] Initializing /data/josh/2101to600b.stk: [testng] 07:49:27,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:49:27,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:49:27,177 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-09_07-49-27.log] [testng] 07:49:27,178 |-INFO in ch.qos.logback.core.sift.SiftProcessor@188d1270 - End of configuration. [testng] [2025-03-09 07:49:51,347] [pool-1-thread-10] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] 07:49:51,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:49:51,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:49:51,348 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-09_07-49-51.log] [testng] 07:49:51,349 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c47b50f - End of configuration. [testng] [2025-03-09 07:49:54,656] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] 07:49:54,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:49:54,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:49:54,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-09_07-49-54.log] [testng] 07:49:54,657 |-INFO in ch.qos.logback.core.sift.SiftProcessor@141c5a7f - End of configuration. [testng] [2025-03-09 07:50:08,203] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] 07:50:08,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:50:08,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:50:08,203 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-09_07-50-08.log] [testng] 07:50:08,204 |-INFO in ch.qos.logback.core.sift.SiftProcessor@637939f8 - End of configuration. [testng] [2025-03-09 07:50:12,101] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] 07:50:12,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:50:12,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:50:12,102 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-09_07-50-12.log] [testng] 07:50:12,103 |-INFO in ch.qos.logback.core.sift.SiftProcessor@262750b2 - End of configuration. [testng] [2025-03-09 07:50:16,133] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] 07:50:16,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:50:16,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:50:16,134 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-09_07-50-16.log] [testng] 07:50:16,134 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a79ba18 - End of configuration. [testng] [2025-03-09 07:50:22,737] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] 07:50:22,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:50:22,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:50:22,738 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-09_07-50-22.log] [testng] 07:50:22,738 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2675b71 - End of configuration. [testng] [2025-03-09 07:50:28,087] [pool-1-thread-5] Used files list does not include base file [testng] [2025-03-09 07:50:28,090] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] 07:50:28,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:50:28,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:50:28,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-09_07-50-28.log] [testng] 07:50:28,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28bf35c6 - End of configuration. [testng] [2025-03-09 07:50:33,043] [pool-1-thread-4] Used files list does not include base file [testng] [2025-03-09 07:50:33,045] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] 07:50:33,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:50:33,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:50:33,046 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-09_07-50-33.log] [testng] 07:50:33,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49c573a6 - End of configuration. [testng] [2025-03-09 07:50:37,019] [pool-1-thread-3] Used files list does not include base file [testng] [2025-03-09 07:50:37,022] [pool-1-thread-2] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] 07:50:37,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:50:37,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:50:37,023 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-09_07-50-37.log] [testng] 07:50:37,024 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45ace903 - End of configuration. [testng] [2025-03-09 07:51:04,483] [pool-1-thread-2] Initializing /data/samples/zserEight.stk: [testng] [2025-03-09 07:51:16,341] [pool-1-thread-10] Initializing /data/ascb/golgi marker.tif: [testng] [2025-03-09 07:51:27,192] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2025-03-09 07:51:31,340] [pool-1-thread-3] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2025-03-09 07:51:35,936] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2025-03-09 07:51:41,722] [pool-1-thread-8] Used files list does not include base file [testng] [2025-03-09 07:51:51,286] [pool-1-thread-10] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2025-03-09 07:51:55,776] [pool-1-thread-12] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211111_HTR5_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-03-09 07:52:06,586] [pool-1-thread-7] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2025-03-09 07:52:19,212] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_4well/Dish3_w1FRET_s1_t1.TIF: [testng] [2025-03-09 07:52:58,938] [pool-1-thread-10] Initializing /data/grant/X.STK: [testng] [2025-03-09 07:53:03,608] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2025-03-09 07:53:09,195] [pool-1-thread-7] Used files list does not include base file [testng] [2025-03-09 07:53:09,196] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2025-03-09 07:53:31,328] [pool-1-thread-3] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2025-03-09 07:53:40,298] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-09 07:53:54,429] [pool-1-thread-10] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_HTR5_ISOto5HT_35mmdish/5HT/Dish1_w1FRET_t1.TIF: [testng] [2025-03-09 07:54:10,336] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-09 07:54:19,123] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2025-03-09 07:54:30,362] [pool-1-thread-5] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2025-03-09 07:55:38,865] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2025-03-09 07:55:43,907] [pool-1-thread-4] Used files list does not include base file [testng] [2025-03-09 07:55:53,480] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2025-03-09 07:55:59,455] [pool-1-thread-9] Used files list does not include base file [testng] [2025-03-09 07:56:04,617] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2025-03-09 07:56:10,070] [pool-1-thread-11] Initializing /data/samples/zserSixteen.stk: [testng] [2025-03-09 07:56:29,887] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2025-03-09 07:56:40,726] [pool-1-thread-11] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2025-03-09 07:56:53,307] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_4well/Dish9_w1FRET_s1_t1.TIF: [testng] [2025-03-09 07:57:26,838] [pool-1-thread-4] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2025-03-09 07:58:29,302] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1E_ISOto5HT_35mm/Dish1_w1FRET_t1.TIF: [testng] [2025-03-09 07:58:47,331] [pool-1-thread-7] Initializing 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[2025-03-09 08:07:10,073] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2025-03-09 08:07:41,778] [pool-1-thread-11] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2025-03-09 08:08:48,255] [pool-1-thread-11] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2025-03-09 08:09:18,409] [pool-1-thread-11] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2025-03-09 08:09:41,677] [pool-1-thread-11] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_Vec_ISOto5HT_35mmdish/HCl/Dish2_w1FRET_t1.TIF: [testng] [2025-03-09 08:12:48,274] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2025-03-09 08:12:56,198] [pool-1-thread-6] Used files list does not include base file [testng] [2025-03-09 08:15:37,715] [pool-1-thread-12] Initializing /data/david/tl4.tif: [testng] [2025-03-09 08:16:27,731] [pool-1-thread-12] Initializing 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[pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2025-03-09 08:32:03,438] [pool-1-thread-9] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2025-03-09 08:32:37,807] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2025-03-09 08:34:19,103] [pool-1-thread-11] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2025-03-09 08:34:50,206] [pool-1-thread-11] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2025-03-09 08:36:18,908] [pool-1-thread-11] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2025-03-09 08:36:52,912] [pool-1-thread-11] Initializing /data/josh/2101to600e.stk: [testng] [2025-03-09 08:39:13,907] [pool-1-thread-9] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR1D_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-03-09 08:40:09,214] [pool-1-thread-11] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2025-03-09 08:40:45,588] [pool-1-thread-11] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2025-03-09 08:41:11,704] [pool-1-thread-11] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211111_Vec_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-03-09 09:00:15,274] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2025-03-09 09:00:26,671] [pool-1-thread-7] Initializing /data/heiko/sample_2x2.stk: [testng] [2025-03-09 09:00:59,376] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD4_ISOtoDA_4well/Dish4_w1FRET_s1_t1.TIF: [testng] [2025-03-09 09:02:15,619] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2025-03-09 09:02:21,114] [pool-1-thread-9] Used files list does not include base file [testng] 09:02:46,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:02:46,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:02:46,183 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-09_09-02-46.log] [testng] 09:02:46,183 |-INFO in ch.qos.logback.core.sift.SiftProcessor@281cb87 - End of configuration. [testng] [2025-03-09 09:03:19,377] [pool-1-thread-9] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2025-03-09 09:03:49,640] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-09 09:04:07,191] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-09 09:04:21,461] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2025-03-09 09:04:44,276] [pool-1-thread-11] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2025-03-09 09:05:05,045] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2025-03-09 09:05:28,182] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2025-03-09 09:05:53,917] [pool-1-thread-9] Initializing 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[pool-1-thread-11] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2025-03-09 09:32:24,214] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2025-03-09 09:33:38,283] [pool-1-thread-2] Initializing /data/qa-16915/m-04.tif: [testng] [2025-03-09 09:34:06,877] [pool-1-thread-11] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1F_ISOto5HT_35mm/Dish2_w1FRET_t1.TIF: [testng] [2025-03-09 09:34:22,723] [pool-1-thread-2] Initializing /data/cumol-test-series/23.001: [testng] [2025-03-09 09:37:00,773] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2025-03-09 09:37:06,683] [pool-1-thread-2] Used files list does not include base file [testng] [2025-03-09 09:39:20,047] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1E_ISOto5HT_35mm/Dish2_w1FRET_t1.TIF: [testng] [2025-03-09 09:39:39,417] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2025-03-09 09:40:27,763] [pool-1-thread-2] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2025-03-09 09:40:50,696] [pool-1-thread-9] Initializing /data/josh/2101to600astk.stk: [testng] [2025-03-09 09:42:35,043] [pool-1-thread-2] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2025-03-09 09:43:54,846] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-09 09:45:12,732] [pool-1-thread-2] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2025-03-09 09:46:40,634] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1F_ISOto5HT_35mm/Dish1_w1FRET_t1.TIF: [testng] [2025-03-09 09:54:41,019] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2025-03-09 09:55:24,048] [pool-1-thread-9] Initializing /data/qa-16915/m-01.tif: [testng] [2025-03-09 09:55:51,513] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-09 09:56:19,267] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2025-03-09 09:56:36,030] [pool-1-thread-9] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2025-03-09 09:56:49,947] [pool-1-thread-10] Initializing /data/dave/Z Series.stk: [testng] [2025-03-09 09:57:00,303] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2025-03-09 09:57:17,482] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2025-03-09 09:57:26,205] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2025-03-09 09:57:30,422] [pool-1-thread-11] Used files list does not include base file [testng] [2025-03-09 09:57:32,441] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_Vec_ISOto5HT_35mmdish/5HT/Dish1_w1FRET_t1.TIF: [testng] [2025-03-09 09:57:54,923] [pool-1-thread-9] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_Vec_ISOto5HT_35mm/Dish1_w1FRET_t1.TIF: [testng] [2025-03-09 09:58:05,898] [pool-1-thread-10] Initializing /data/samples/zseries.stk: [testng] [2025-03-09 09:58:28,532] [pool-1-thread-11] Initializing /data/qa-16915/m-04-488.tif: [testng] [2025-03-09 09:58:35,951] [pool-1-thread-10] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2025-03-09 09:58:55,929] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2025-03-09 09:59:52,749] [pool-1-thread-10] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2025-03-09 10:00:20,696] [pool-1-thread-10] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2025-03-09 10:00:25,241] [pool-1-thread-3] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2025-03-09 10:00:56,057] [pool-1-thread-3] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2025-03-09 10:01:08,770] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2025-03-09 10:01:14,681] [pool-1-thread-11] Used files list does not include base file [testng] [2025-03-09 10:01:28,447] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2025-03-09 10:01:34,291] [pool-1-thread-3] Used files list does not include base file [testng] [2025-03-09 10:01:46,389] [pool-1-thread-10] Initializing /data/ascb/C1 Stack.stk: [testng] [2025-03-09 10:02:10,155] [pool-1-thread-10] Initializing /data/josh/2101to800.stk: [testng] [2025-03-09 10:02:37,132] [pool-1-thread-12] Initializing 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[testng] [2025-03-09 10:57:59,999] [pool-1-thread-4] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2025-03-09 10:58:16,200] [pool-1-thread-12] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2025-03-09 10:58:29,574] [pool-1-thread-4] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2025-03-09 10:58:45,718] [pool-1-thread-12] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211123_HTR1B_ISOto5HT_4well/Dish2_w1FRET_s1_t1.TIF: [testng] [2025-03-09 10:59:13,348] [pool-1-thread-7] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2025-03-09 10:59:25,680] [pool-1-thread-4] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_35mmdish/Dish3_w1FRET_t1.TIF: [testng] [2025-03-09 11:00:11,231] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2025-03-09 11:00:49,776] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full 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11:37:37,708] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2025-03-09 11:37:47,997] [pool-1-thread-5] Initializing /data/samples/diatoms3d.stk: [testng] [2025-03-09 11:37:56,654] [pool-1-thread-1] Initializing /data/graham/G_Wright raw.stk: [testng] [2025-03-09 11:38:04,212] [pool-1-thread-5] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2025-03-09 11:38:14,625] [pool-1-thread-1] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2025-03-09 11:38:34,892] [pool-1-thread-1] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2025-03-09 11:38:48,798] [pool-1-thread-5] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2025-03-09 11:39:11,478] [pool-1-thread-5] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_Vec_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-03-09 11:42:36,687] [pool-1-thread-1] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2025-03-09 11:42:43,444] [pool-1-thread-6] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2025-03-09 11:43:13,168] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2025-03-09 11:43:43,949] [pool-1-thread-1] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2025-03-09 11:44:24,811] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR1D_ISOto5HT_35mmdish/Dish3_w1FRET_t1.TIF: [testng] [2025-03-09 11:44:38,183] [pool-1-thread-1] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2025-03-09 11:45:23,293] [pool-1-thread-1] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211123_HTR1A_ISOto5HT_4well/Dish1_w1FRET_s1_t1.TIF: [testng] [2025-03-09 11:51:52,603] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2025-03-09 11:52:12,596] [pool-1-thread-5] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_HTR1F_ISOto5HT_4well/Dish6_w1FRET_s1_t1.TIF: [testng] 16:24:58,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 16:24:58,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:24:58,682 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-09_16-24-58.log] [testng] 16:24:58,682 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bd1f341 - End of configuration. [testng] 16:28:56,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 16:28:56,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:28:56,943 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-09_16-28-56.log] [testng] 16:28:56,944 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ba4ae3a - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 13833, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 622 minutes 52 seconds Finished: SUCCESS