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Started by upstream project "BIOFORMATS-test-repo" build number 41 originally caused by: Started by upstream project "Trigger" build number 47 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins3832042327663964658.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_5870_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:50:42,894 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:50:42,896 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:50:42,896 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:50:42,897 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:50:42,898 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:50:42,898 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:50:42,898 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:50:42,898 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:50:42,899 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:50:42,899 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:50:42,899 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:50:42,899 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:50:43,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:50:43,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:50:43,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:50:43,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:50:43,187 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:50:43,187 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:50:43,187 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:50:43,188 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:50:43,188 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:50:43,189 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:50:43,189 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 290 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-22 02:50:43,199] [main] java.version = 1.8.0_342 [testng] 02:50:43,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:50:43,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:43,251 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-22_02-50-43.log] [testng] 02:50:43,253 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-22 02:50:43,255] [main] testng.directory = /data [testng] [2024-04-22 02:50:43,255] [main] testng.configDirectory = /config [testng] [2024-04-22 02:50:43,268] [main] testng.multiplier = 1.0 [testng] [2024-04-22 02:50:43,268] [main] testng.in-memory = false [testng] [2024-04-22 02:50:43,269] [main] testng.allow-missing = false [testng] [2024-04-22 02:50:43,269] [main] user.language = fr [testng] [2024-04-22 02:50:43,269] [main] user.country = FR [testng] [2024-04-22 02:50:43,269] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-22 02:50:44,409] [main] ---------------------------------------- [testng] [2024-04-22 02:50:44,409] [main] Total files: 22 [testng] [2024-04-22 02:50:44,409] [main] Scan time: 1.14 s (51 ms/file) [testng] [2024-04-22 02:50:44,410] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-22 02:50:51,590] [pool-1-thread-1] Initializing /data/converted/clown8c.seq: [testng] 02:50:51,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:50:51,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:51,592 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-22_02-50-51.log] [testng] 02:50:51,592 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f93bf6a - End of configuration. [testng] [2024-04-22 02:50:51,612] [pool-1-thread-12] Initializing /data/converted/NESb_C2_TP7.seq: [testng] 02:50:51,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:50:51,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:51,613 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-22_02-50-51.log] [testng] 02:50:51,613 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4392289a - End of configuration. [testng] [2024-04-22 02:50:51,640] [pool-1-thread-11] Initializing /data/converted/mitosis-test.tif: [testng] 02:50:51,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:50:51,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:51,641 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-22_02-50-51.log] [testng] 02:50:51,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2280f896 - End of configuration. [testng] [2024-04-22 02:50:51,749] [pool-1-thread-10] Initializing /data/converted/clown.seq: [testng] 02:50:51,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:50:51,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:51,750 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-22_02-50-51.log] [testng] 02:50:51,751 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46c28c79 - End of configuration. [testng] [2024-04-22 02:50:51,767] [pool-1-thread-9] Initializing /data/alex/AFAset0003.ips: [testng] 02:50:51,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:50:51,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:51,768 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-22_02-50-51.log] [testng] 02:50:51,768 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4332da1f - End of configuration. [testng] [2024-04-22 02:50:51,785] [pool-1-thread-8] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] 02:50:51,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:50:51,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:51,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-22_02-50-51.log] [testng] 02:50:51,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1807f894 - End of configuration. [testng] [2024-04-22 02:50:51,841] [pool-1-thread-7] Initializing /data/samples/PROBE.TIF: [testng] 02:50:51,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:50:51,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:51,842 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-22_02-50-51.log] [testng] 02:50:51,843 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f181f7 - End of configuration. [testng] [2024-04-22 02:50:51,857] [pool-1-thread-6] Initializing /data/converted/dub01.ipw: [testng] 02:50:51,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:50:51,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:51,858 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-22_02-50-51.log] [testng] 02:50:51,858 |-INFO in ch.qos.logback.core.sift.SiftProcessor@163312f6 - End of configuration. [testng] [2024-04-22 02:50:51,884] [pool-1-thread-5] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 02:50:51,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:50:51,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:51,885 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-22_02-50-51.log] [testng] 02:50:51,886 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71ba798f - End of configuration. [testng] [2024-04-22 02:50:51,913] [pool-1-thread-4] Initializing /data/xiuwen/head2.seq: [testng] 02:50:51,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:50:51,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:51,914 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-22_02-50-51.log] [testng] 02:50:51,914 |-INFO in ch.qos.logback.core.sift.SiftProcessor@89a5e85 - End of configuration. [testng] [2024-04-22 02:50:52,034] [pool-1-thread-3] Initializing /data/converted/clown8c.ipw: [testng] 02:50:52,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:50:52,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:52,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-22_02-50-52.log] [testng] 02:50:52,036 |-INFO in ch.qos.logback.core.sift.SiftProcessor@509b8eff - End of configuration. [testng] [2024-04-22 02:50:52,049] [pool-1-thread-2] Initializing /data/converted/dub01.seq: [testng] 02:50:52,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:50:52,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:52,050 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-22_02-50-52.log] [testng] 02:50:52,050 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79b07596 - End of configuration. [testng] [2024-04-22 02:50:53,805] [pool-1-thread-3] Initializing /data/converted/dub01.pic: [testng] [2024-04-22 02:50:53,828] [pool-1-thread-10] Initializing /data/samples/FLDUAL.TIF: [testng] [2024-04-22 02:50:53,856] [pool-1-thread-1] Initializing /data/converted/clown.tif: [testng] [2024-04-22 02:50:53,869] [pool-1-thread-7] Initializing /data/converted/clown.ipw: [testng] [2024-04-22 02:50:53,881] [pool-1-thread-6] Initializing /data/samples/HEART.SEQ: [testng] [2024-04-22 02:50:53,905] [pool-1-thread-2] Initializing /data/converted/mitosis-test.ipw: [testng] [2024-04-22 02:50:53,928] [pool-1-thread-12] Initializing /data/converted/clown8c.tif: [testng] [2024-04-22 02:50:53,949] [pool-1-thread-5] Initializing /data/samples/TISSUE.TIF: [testng] [2024-04-22 02:50:54,116] [pool-1-thread-8] Initializing /data/converted/mitosis-test.seq: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 28 seconds Finished: SUCCESS