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Started by upstream project "BIOFORMATS-test-repo" build number 369 originally caused by: Started by upstream project "Trigger" build number 395 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins12365926753222386234.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_58904_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [resolver:resolve] Resolving artifacts [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml compile-tests: [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [resolver:resolve] Resolving artifacts [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:17:18,202 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 03:17:18,203 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 03:17:18,203 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:17:18,204 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:17:18,204 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:17:18,205 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:17:18,205 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:17:18,205 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:17:18,205 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:17:18,206 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:17:18,206 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:17:18,206 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:17:18,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:17:18,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:17:18,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:17:18,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:17:18,384 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:17:18,385 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:17:18,385 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:17:18,385 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:17:18,385 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 03:17:18,386 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 03:17:18,386 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 181 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-10 03:17:18,395] [main] java.version = 17.0.2 [testng] 03:17:18,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:17:18,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:17:18,436 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-10_03-17-18.log] [testng] 03:17:18,438 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-10 03:17:18,439] [main] testng.directory = /data [testng] [2025-03-10 03:17:18,440] [main] testng.configDirectory = /config [testng] [2025-03-10 03:17:18,448] [main] testng.multiplier = 1.0 [testng] [2025-03-10 03:17:18,449] [main] testng.in-memory = false [testng] [2025-03-10 03:17:18,449] [main] testng.allow-missing = false [testng] [2025-03-10 03:17:18,449] [main] user.language = fr [testng] [2025-03-10 03:17:18,449] [main] user.country = FR [testng] [2025-03-10 03:17:18,449] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-10 03:17:24,488] [main] ---------------------------------------- [testng] [2025-03-10 03:17:24,488] [main] Total files: 32 [testng] [2025-03-10 03:17:24,489] [main] Scan time: 6.039 s (188 ms/file) [testng] [2025-03-10 03:17:24,489] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-10 03:18:21,244] [pool-1-thread-1] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] 03:18:21,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:18:21,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:18:21,245 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-10_03-18-21.log] [testng] 03:18:21,246 |-INFO in ch.qos.logback.core.sift.SiftProcessor@503fa467 - End of configuration. [testng] [2025-03-10 03:18:21,841] [pool-1-thread-12] Initializing /data/samples/Criterion.1sc: [testng] 03:18:21,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:18:21,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:18:21,843 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-10_03-18-21.log] [testng] 03:18:21,843 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66a93049 - End of configuration. [testng] [2025-03-10 03:18:22,472] [pool-1-thread-11] Initializing /data/geert/bad example1.jpg: [testng] 03:18:22,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:18:22,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:18:22,473 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-10_03-18-22.log] [testng] 03:18:22,474 |-INFO in ch.qos.logback.core.sift.SiftProcessor@791421d7 - End of configuration. [testng] [2025-03-10 03:18:22,696] [pool-1-thread-10] Initializing /data/david/Opened in imageJ.tiff: [testng] 03:18:22,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:18:22,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:18:22,697 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-10_03-18-22.log] [testng] 03:18:22,697 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b371d96 - End of configuration. [testng] [2025-03-10 03:18:24,787] [pool-1-thread-9] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] 03:18:24,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:18:24,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:18:24,788 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-10_03-18-24.log] [testng] 03:18:24,789 |-INFO in ch.qos.logback.core.sift.SiftProcessor@590b3eb8 - End of configuration. [testng] [2025-03-10 03:18:26,745] [pool-1-thread-8] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] 03:18:26,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:18:26,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:18:26,746 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-10_03-18-26.log] [testng] 03:18:26,746 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31594123 - End of configuration. [testng] [2025-03-10 03:18:27,377] [pool-1-thread-7] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] 03:18:27,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:18:27,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:18:27,377 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-10_03-18-27.log] [testng] 03:18:27,378 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2baa9a1d - End of configuration. [testng] [2025-03-10 03:18:30,008] [pool-1-thread-6] Initializing /data/adrian/test_img.1sc: [testng] 03:18:30,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:18:30,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:18:30,009 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-10_03-18-30.log] [testng] 03:18:30,010 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dae5920 - End of configuration. [testng] [2025-03-10 03:18:30,655] [pool-1-thread-5] Initializing /data/qa-29469/bad2.1sc: [testng] 03:18:30,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:18:30,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:18:30,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-10_03-18-30.log] [testng] 03:18:30,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20a301d3 - End of configuration. [testng] [2025-03-10 03:18:31,297] [pool-1-thread-4] Initializing /data/geert/good example1.1sc: [testng] 03:18:31,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:18:31,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:18:31,298 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-10_03-18-31.log] [testng] 03:18:31,299 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79a0f323 - End of configuration. [testng] [2025-03-10 03:18:31,972] [pool-1-thread-3] Initializing /data/geert/bad example1.1sc.jpg: [testng] 03:18:31,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:18:31,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:18:31,974 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-10_03-18-31.log] [testng] 03:18:31,975 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bcf25a0 - End of configuration. [testng] [2025-03-10 03:18:32,222] [pool-1-thread-2] Initializing /data/geert/good example1.1sc.jpg: [testng] 03:18:32,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:18:32,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:18:32,223 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-10_03-18-32.log] [testng] 03:18:32,224 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d4d00f7 - End of configuration. [testng] [2025-03-10 03:18:38,131] [pool-1-thread-2] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] [2025-03-10 03:18:41,278] [pool-1-thread-3] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] [2025-03-10 03:18:45,085] [pool-1-thread-11] Initializing /data/qa-16880/c-src v7.1sc: [testng] [2025-03-10 03:18:46,550] [pool-1-thread-12] Initializing /data/qa-29459/bad.1sc: [testng] [2025-03-10 03:18:48,377] [pool-1-thread-6] Initializing /data/keith/PF020328saur v3.1sc: [testng] [2025-03-10 03:18:49,754] [pool-1-thread-5] Initializing /data/geert/bad example1.1sc: [testng] [2025-03-10 03:18:51,215] [pool-1-thread-8] Initializing /data/qa-29469/good.1sc: [testng] [2025-03-10 03:18:52,470] [pool-1-thread-1] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] [2025-03-10 03:18:53,835] [pool-1-thread-4] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] [2025-03-10 03:19:06,010] [pool-1-thread-6] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] [2025-03-10 03:19:07,790] [pool-1-thread-11] Initializing /data/keith/test2.1sc: [testng] [2025-03-10 03:19:09,317] [pool-1-thread-8] Initializing /data/samples/imagesEight.1sc: [testng] [2025-03-10 03:19:10,710] [pool-1-thread-12] Initializing /data/qa-29469/bad3.1sc: [testng] [2025-03-10 03:19:11,883] [pool-1-thread-4] Initializing /data/keith/test.1sc: [testng] [2025-03-10 03:19:13,024] [pool-1-thread-5] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] [2025-03-10 03:19:14,308] [pool-1-thread-1] Initializing /data/qa-29459/bad.jpg: [testng] [2025-03-10 03:19:14,688] [pool-1-thread-10] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] [2025-03-10 03:19:19,027] [pool-1-thread-9] Initializing /data/keith/pg020410saur3.1sc: [testng] [2025-03-10 03:19:20,306] [pool-1-thread-7] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] [2025-03-10 03:19:24,181] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 43 seconds Finished: SUCCESS