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Started by upstream project "BIOFORMATS-test-repo" build number 370 originally caused by: Started by upstream project "Trigger" build number 396 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins10119187141069570081.sh + '[' leica = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_58933_merge_ci -v /uod/idr/repos/curated/leica:/data -v /uod/idr-scratch/merge-ci/curated/leica:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 08:06:35,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:06:35,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:06:35,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:06:35,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:06:35,190 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:06:35,190 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:06:35,190 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:06:35,191 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:06:35,191 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7e0b85f9 - End of configuration. [testng] 08:06:35,192 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6a28ffa4 - Registering current configuration as safe fallback point [testng] 08:06:35,192 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48ae9b55 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 498 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-10 08:06:35,201] [main] java.version = 1.8.0_342 [testng] 08:06:35,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:06:35,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:35,259 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-10_08-06-35.log] [testng] 08:06:35,260 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-10 08:06:35,263] [main] testng.directory = /data [testng] [2025-03-10 08:06:35,263] [main] testng.configDirectory = /config [testng] [2025-03-10 08:06:35,380] [main] testng.multiplier = 1.0 [testng] [2025-03-10 08:06:35,381] [main] testng.in-memory = false [testng] [2025-03-10 08:06:35,381] [main] testng.allow-missing = false [testng] [2025-03-10 08:06:35,381] [main] user.language = fr [testng] [2025-03-10 08:06:35,381] [main] user.country = FR [testng] [2025-03-10 08:06:35,381] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-10 08:09:46,075] [main] ---------------------------------------- [testng] [2025-03-10 08:09:46,076] [main] Total files: 5651 [testng] [2025-03-10 08:09:46,076] [main] Scan time: 190.694 s (33 ms/file) [testng] [2025-03-10 08:09:46,076] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 44 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-10 08:14:33,721] [pool-1-thread-1] Initializing /data/constantin/cell6/cell6/Quant_Image_00.jpg: [testng] 08:14:33,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:14:33,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:14:33,723 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-10_08-14-33.log] [testng] 08:14:33,723 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7df0cf3f - End of configuration. [testng] [2025-03-10 08:14:34,126] [pool-1-thread-12] Initializing /data/simon/Leica demo/GFP-YFPcaax/GFP-YFPcaax.lei: [testng] 08:14:34,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:14:34,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:14:34,127 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-10_08-14-34.log] [testng] 08:14:34,128 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12c4c36c - End of configuration. [testng] [2025-03-10 08:14:37,442] [pool-1-thread-11] Initializing /data/martin/samples-SP2/samples-SP2.lei: [testng] 08:14:37,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:14:37,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:14:37,443 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-10_08-14-37.log] [testng] 08:14:37,444 |-INFO in ch.qos.logback.core.sift.SiftProcessor@468703c1 - End of configuration. [testng] [2025-03-10 08:14:40,461] [pool-1-thread-10] Initializing /data/julie/c164_1.tif: [testng] 08:14:40,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:14:40,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:14:40,463 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-10_08-14-40.log] [testng] 08:14:40,463 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46798b02 - End of configuration. [testng] [2025-03-10 08:14:43,549] [pool-1-thread-9] Initializing /data/oliver/o459/o459.lei: [testng] 08:14:43,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:14:43,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:14:43,550 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-10_08-14-43.log] [testng] 08:14:43,550 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58fe68d5 - End of configuration. [testng] [2025-03-10 08:14:46,410] [pool-1-thread-8] Initializing /data/grant/Leica SP2 (25-11-10).lei: [testng] 08:14:46,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:14:46,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:14:46,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-10_08-14-46.log] [testng] 08:14:46,412 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71accc85 - End of configuration. [testng] [2025-03-10 08:14:49,748] [pool-1-thread-7] Initializing /data/joel/sequential scan 2/sequential scan 2.lei: [testng] 08:14:49,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:14:49,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:14:49,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-10_08-14-49.log] [testng] 08:14:49,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58898a49 - End of configuration. [testng] [2025-03-10 08:14:52,824] [pool-1-thread-6] Initializing /data/constantin/cell6/cell6/Logo.jpg: [testng] 08:14:52,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:14:52,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:14:52,825 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-10_08-14-52.log] [testng] 08:14:52,825 |-INFO in ch.qos.logback.core.sift.SiftProcessor@365bdb68 - End of configuration. [testng] [2025-03-10 08:14:53,515] [pool-1-thread-5] Initializing /data/christophe/LEI_Saturated_Bug/Saturated_Problem.tif: [testng] 08:14:53,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:14:53,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:14:53,516 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-10_08-14-53.log] [testng] 08:14:53,517 |-INFO in ch.qos.logback.core.sift.SiftProcessor@481b31da - End of configuration. [testng] [2025-03-10 08:14:57,832] [pool-1-thread-4] Initializing /data/michael/2007-01-31_zres_sp2.lei: [testng] 08:14:57,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:14:57,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:14:57,833 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-10_08-14-57.log] [testng] 08:14:57,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e079c8e - End of configuration. [testng] [2025-03-10 08:15:01,075] [pool-1-thread-3] Initializing /data/clay/leica_stack.tif: [testng] 08:15:01,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:15:01,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:15:01,076 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-10_08-15-01.log] [testng] 08:15:01,076 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60f9896d - End of configuration. [testng] [2025-03-10 08:15:03,712] [pool-1-thread-2] Initializing /data/simon/Leica demo/CFP-DsRed YFP neg/CFP-DsRed YFP neg.lei: [testng] 08:15:03,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:15:03,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:15:03,713 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-10_08-15-03.log] [testng] 08:15:03,713 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31d13201 - End of configuration. [testng] [2025-03-10 08:15:20,585] [pool-1-thread-1] Initializing /data/brian/tropo/tropo.lei: [testng] [2025-03-10 08:15:24,225] [pool-1-thread-6] Initializing /data/simon/Leica demo/RNA FISH/RNA FISH.lei: [testng] [2025-03-10 08:15:31,617] [pool-1-thread-3] Initializing /data/constantin/cell6/Quant_Image_02.jpg: [testng] [2025-03-10 08:15:39,049] [pool-1-thread-10] Initializing /data/mark/071026-561nm check/071026-561nm check.lei: [testng] [2025-03-10 08:15:42,949] [pool-1-thread-5] Initializing /data/andrey/10310500/10310500.lei: [testng] [2025-03-10 08:15:51,530] [pool-1-thread-3] Initializing /data/david/intestine/intestine.lei: [testng] [2025-03-10 08:16:34,395] [pool-1-thread-4] Initializing /data/brian/leica-original/050118.lei: [testng] [2025-03-10 08:17:03,695] [pool-1-thread-1] Initializing /data/clay/leica_stack-exported/leica_stack-exported.lei: [testng] [2025-03-10 08:18:15,285] [pool-1-thread-1] Initializing /data/constantin/cell6/cell6/Quant_Image_02.jpg: [testng] [2025-03-10 08:18:26,273] [pool-1-thread-1] Initializing /data/constantin/cell6/Quant_Image_00.jpg: [testng] [2025-03-10 08:18:39,141] [pool-1-thread-1] Initializing /data/julie/biorad/8291mcd8_raw01.pic: [testng] [2025-03-10 08:19:33,108] [pool-1-thread-1] Initializing /data/constantin/cell6/cell6.lei: [testng] [2025-03-10 08:27:51,035] [pool-1-thread-12] Initializing /data/simon/Leica demo/fish/fish.lei: [testng] [2025-03-10 08:28:44,896] [pool-1-thread-6] Initializing /data/constantin/cell6/Graphs_1_00.jpg: [testng] [2025-03-10 08:28:54,338] [pool-1-thread-6] Initializing /data/constantin/cell6/Quant_Image_01.jpg: [testng] [2025-03-10 08:29:06,263] [pool-1-thread-6] Initializing /data/clay/leica_stack.lei: [testng] [2025-03-10 08:30:16,140] [pool-1-thread-6] Initializing /data/christophe/LEI_Saturated_Bug/070123_HippoQ2Q3/Exemple.tif: [testng] [2025-03-10 08:30:50,248] [pool-1-thread-6] Initializing /data/berra/eggcmgfp230909/eggcmgfp230909.lei: [testng] [2025-03-10 08:36:22,586] [pool-1-thread-2] Initializing /data/simon/Leica demo/test/test.lei: [testng] [2025-03-10 08:40:46,093] [pool-1-thread-3] Initializing /data/constantin/cell6/Logo.jpg: [testng] [2025-03-10 08:40:57,248] [pool-1-thread-3] Initializing /data/constantin/cell6/cell6/Quant_Image_01.jpg: [testng] [2025-03-10 08:41:05,864] [pool-1-thread-11] Initializing /data/joel/sequential scan 3/sequential scan 3.lei: [testng] [2025-03-10 08:41:14,906] [pool-1-thread-3] Initializing /data/martin/100422_02-rg-100x_CF1/100422_02-rg-100x_CF1.lei: [testng] [2025-03-10 08:41:34,650] [pool-1-thread-7] Initializing /data/vytas/4voxels/4voxels.lei: [testng] [2025-03-10 08:45:09,112] [pool-1-thread-1] Initializing /data/christophe/Leica stacks/Nf5.lei: [testng] [2025-03-10 08:46:34,387] [pool-1-thread-10] Initializing /data/stjude/NIHSSE02-3.lei: [testng] [2025-03-10 08:51:04,450] [pool-1-thread-8] Initializing /data/matija/PapilioScale40x/PapilioScale40x.lei: [testng] [2025-03-10 08:55:00,549] [pool-1-thread-10] Initializing /data/julie/biorad/25-65.tif: [testng] [2025-03-10 09:01:25,396] [pool-1-thread-10] Initializing /data/brian/050627-leica/050628-leica.lei: [testng] [2025-03-10 09:15:23,023] [pool-1-thread-4] Initializing /data/christophe/LEI_Saturated_Bug/070123_HippoQ2Q3/070123_HippoQ2Q3.lei: Build was aborted Calling Pipeline was cancelled Finished: ABORTED