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Started by upstream project "BIOFORMATS-test-repo" build number 370 originally caused by: Started by upstream project "Trigger" build number 396 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins2339781047185292581.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_58951_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 08:48:24,805 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 08:48:24,807 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 08:48:24,807 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:48:24,808 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:48:24,808 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:48:24,808 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:48:24,809 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:48:24,809 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:48:24,809 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:48:24,809 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:48:24,810 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:48:24,810 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:48:25,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:48:25,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:48:25,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:48:25,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:48:25,067 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:48:25,067 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:48:25,067 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:48:25,068 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:48:25,068 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 08:48:25,069 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 08:48:25,069 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 260 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-10 08:48:25,078] [main] java.version = 1.8.0_342 [testng] 08:48:25,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:48:25,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:48:25,125 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-10_08-48-25.log] [testng] 08:48:25,127 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-10 08:48:25,129] [main] testng.directory = /data [testng] [2025-03-10 08:48:25,129] [main] testng.configDirectory = /config [testng] [2025-03-10 08:48:25,141] [main] testng.multiplier = 1.0 [testng] [2025-03-10 08:48:25,141] [main] testng.in-memory = false [testng] [2025-03-10 08:48:25,141] [main] testng.allow-missing = false [testng] [2025-03-10 08:48:25,142] [main] user.language = fr [testng] [2025-03-10 08:48:25,142] [main] user.country = FR [testng] [2025-03-10 08:48:25,142] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-10 08:50:56,668] [main] ---------------------------------------- [testng] [2025-03-10 08:50:56,668] [main] Total files: 21 [testng] [2025-03-10 08:50:56,668] [main] Scan time: 151.526 s (7215 ms/file) [testng] [2025-03-10 08:50:56,668] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-10 09:13:53,643] [pool-1-thread-1] Initializing /data/stefan/001_q01.txt: [testng] 09:13:53,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:13:53,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:13:53,645 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-10_09-13-53.log] [testng] 09:13:53,645 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4811f610 - End of configuration. [testng] [2025-03-10 09:15:18,747] [pool-1-thread-12] Initializing /data/stefan/001_q12.txt: [testng] 09:15:18,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:15:18,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:15:18,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-10_09-15-18.log] [testng] 09:15:18,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65024356 - End of configuration. [testng] [2025-03-10 09:17:38,376] [pool-1-thread-11] Initializing /data/stefan/001_q04.txt: [testng] 09:17:38,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:17:38,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:17:38,377 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-10_09-17-38.log] [testng] 09:17:38,378 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c1297ad - End of configuration. [testng] [2025-03-10 09:18:54,290] [pool-1-thread-10] Initializing /data/stefan/001_q08.txt: [testng] 09:18:54,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:18:54,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:18:54,291 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-10_09-18-54.log] [testng] 09:18:54,291 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ddf004f - End of configuration. [testng] [2025-03-10 09:22:06,808] [pool-1-thread-9] Initializing /data/stefan/001_q14.txt: [testng] 09:22:06,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:22:06,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:06,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-10_09-22-06.log] [testng] 09:22:06,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78766952 - End of configuration. [testng] [2025-03-10 09:23:41,705] [pool-1-thread-8] Initializing /data/stefan/001_q02.txt: [testng] 09:23:41,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:23:41,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:23:41,707 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-10_09-23-41.log] [testng] 09:23:41,707 |-INFO in ch.qos.logback.core.sift.SiftProcessor@308b906f - End of configuration. [testng] [2025-03-10 09:25:12,624] [pool-1-thread-7] Initializing /data/stefan/001_q16.txt: [testng] 09:25:12,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:25:12,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:25:12,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-10_09-25-12.log] [testng] 09:25:12,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a570128 - End of configuration. [testng] [2025-03-10 09:27:01,059] [pool-1-thread-6] Initializing /data/stefan/001_q11.txt: [testng] 09:27:01,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:27:01,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:27:01,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-10_09-27-01.log] [testng] 09:27:01,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18a07eee - End of configuration. [testng] [2025-03-10 09:29:55,636] [pool-1-thread-5] Initializing /data/stefan/001_q06.txt: [testng] 09:29:55,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:29:55,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:29:55,637 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-10_09-29-55.log] [testng] 09:29:55,637 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cb06368 - End of configuration. [testng] [2025-03-10 09:31:12,099] [pool-1-thread-4] Initializing /data/stefan/001_q10.txt: [testng] 09:31:12,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:31:12,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:31:12,100 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-10_09-31-12.log] [testng] 09:31:12,100 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a5281cc - End of configuration. [testng] [2025-03-10 09:33:25,772] [pool-1-thread-3] Initializing /data/stefan/001_q07.txt: [testng] 09:33:25,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:33:25,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:33:25,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-10_09-33-25.log] [testng] 09:33:25,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@428f24fd - End of configuration. [testng] [2025-03-10 09:35:38,135] [pool-1-thread-2] Initializing /data/stefan/001_q05.txt: [testng] 09:35:38,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:35:38,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:35:38,136 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-10_09-35-38.log] [testng] 09:35:38,136 |-INFO in ch.qos.logback.core.sift.SiftProcessor@768f0e55 - End of configuration. [testng] [2025-03-10 09:54:20,587] [pool-1-thread-1] Initializing /data/stefan/001_q15.txt: [testng] [2025-03-10 09:55:32,214] [pool-1-thread-2] Initializing /data/stefan/001_q03.txt: [testng] [2025-03-10 09:56:28,744] [pool-1-thread-5] Initializing /data/stefan/001_q18.txt: [testng] [2025-03-10 09:57:31,192] [pool-1-thread-11] Initializing /data/stefan/001_q17.txt: [testng] [2025-03-10 09:58:50,763] [pool-1-thread-8] Initializing /data/stefan/001_q09.txt: [testng] [2025-03-10 10:01:33,747] [pool-1-thread-9] Initializing /data/stefan/001_q13.txt: Build was aborted Calling Pipeline was cancelled Finished: ABORTED