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Started by upstream project "BIOFORMATS-test-repo" build number 371 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins15386126351589150207.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_58960_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 11:41:03,468 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 11:41:03,470 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 11:41:03,470 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:41:03,471 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:41:03,472 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:41:03,472 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:41:03,472 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:41:03,472 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:41:03,472 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:41:03,473 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:41:03,473 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:41:03,473 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:41:03,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:41:03,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:41:03,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:41:03,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:41:03,740 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:41:03,741 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:41:03,741 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:41:03,741 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:41:03,741 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 11:41:03,742 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 11:41:03,742 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 270 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-10 11:41:03,752] [main] java.version = 1.8.0_342 [testng] 11:41:03,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:41:03,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:03,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-10_11-41-03.log] [testng] 11:41:03,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-10 11:41:03,802] [main] testng.directory = /data [testng] [2025-03-10 11:41:03,802] [main] testng.configDirectory = /config [testng] [2025-03-10 11:41:03,820] [main] testng.multiplier = 1.0 [testng] [2025-03-10 11:41:03,821] [main] testng.in-memory = false [testng] [2025-03-10 11:41:03,821] [main] testng.allow-missing = false [testng] [2025-03-10 11:41:03,821] [main] user.language = fr [testng] [2025-03-10 11:41:03,821] [main] user.country = FR [testng] [2025-03-10 11:41:03,821] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-10 11:41:04,718] [main] ---------------------------------------- [testng] [2025-03-10 11:41:04,718] [main] Total files: 36 [testng] [2025-03-10 11:41:04,718] [main] Scan time: 0.897 s (24 ms/file) [testng] [2025-03-10 11:41:04,718] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-10 11:41:06,483] [pool-1-thread-1] Initializing /data/generated/mri-stack13.pcx: [testng] 11:41:06,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:41:06,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:06,484 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-10_11-41-06.log] [testng] 11:41:06,485 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71df619f - End of configuration. [testng] [2025-03-10 11:41:06,543] [pool-1-thread-12] Initializing /data/generated/mri-stack23.pcx: [testng] 11:41:06,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:41:06,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:06,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-10_11-41-06.log] [testng] 11:41:06,545 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fb077f1 - End of configuration. [testng] [2025-03-10 11:41:06,558] [pool-1-thread-11] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] 11:41:06,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:41:06,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:06,559 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-10_11-41-06.log] [testng] 11:41:06,560 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61000b8e - End of configuration. [testng] [2025-03-10 11:41:06,577] [pool-1-thread-10] Initializing /data/generated/mri-stack17.pcx: [testng] 11:41:06,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:41:06,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:06,578 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-10_11-41-06.log] [testng] 11:41:06,578 |-INFO in ch.qos.logback.core.sift.SiftProcessor@462bf57d - End of configuration. [testng] [2025-03-10 11:41:06,590] [pool-1-thread-9] Initializing /data/generated/mri-stack5.pcx: [testng] 11:41:06,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:41:06,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:06,591 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-10_11-41-06.log] [testng] 11:41:06,592 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f758c0b - End of configuration. [testng] [2025-03-10 11:41:06,603] [pool-1-thread-8] Initializing /data/generated/mri-stack7.pcx: [testng] 11:41:06,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:41:06,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:06,604 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-10_11-41-06.log] [testng] 11:41:06,605 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d4fc33f - End of configuration. [testng] [2025-03-10 11:41:06,619] [pool-1-thread-7] Initializing /data/generated/mri-stack11.pcx: [testng] 11:41:06,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:41:06,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:06,620 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-10_11-41-06.log] [testng] 11:41:06,620 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8c090de - End of configuration. [testng] [2025-03-10 11:41:06,629] [pool-1-thread-6] Initializing /data/generated/mri-stack4.pcx: [testng] 11:41:06,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:41:06,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:06,630 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-10_11-41-06.log] [testng] 11:41:06,630 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a7cb19a - End of configuration. [testng] [2025-03-10 11:41:06,643] [pool-1-thread-5] Initializing /data/generated/mri-stack15.pcx: [testng] 11:41:06,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:41:06,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:06,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-10_11-41-06.log] [testng] 11:41:06,644 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50b72c1e - End of configuration. [testng] [2025-03-10 11:41:06,658] [pool-1-thread-4] Initializing /data/generated/mri-stack2.pcx: [testng] 11:41:06,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:41:06,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:06,659 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-10_11-41-06.log] [testng] 11:41:06,659 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77cce6b4 - End of configuration. [testng] [2025-03-10 11:41:06,675] [pool-1-thread-3] Initializing /data/generated/mri-stack18.pcx: [testng] 11:41:06,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:41:06,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:06,676 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-10_11-41-06.log] [testng] 11:41:06,677 |-INFO in ch.qos.logback.core.sift.SiftProcessor@563f85a4 - End of configuration. [testng] [2025-03-10 11:41:06,693] [pool-1-thread-2] Initializing /data/generated/mri-stack8.pcx: [testng] 11:41:06,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:41:06,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:06,694 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-10_11-41-06.log] [testng] 11:41:06,694 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44451871 - End of configuration. [testng] [2025-03-10 11:41:08,738] [pool-1-thread-2] Initializing /data/generated/mri-stack3.pcx: [testng] [2025-03-10 11:41:08,756] [pool-1-thread-7] Initializing /data/generated/mri-stack22.pcx: [testng] [2025-03-10 11:41:08,772] [pool-1-thread-1] Initializing /data/generated/mri-stack20.pcx: [testng] [2025-03-10 11:41:08,783] [pool-1-thread-9] Initializing /data/generated/mri-stack19.pcx: [testng] [2025-03-10 11:41:08,794] [pool-1-thread-6] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2025-03-10 11:41:08,808] [pool-1-thread-5] Initializing /data/generated/mri-stack16.pcx: [testng] [2025-03-10 11:41:08,815] [pool-1-thread-4] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] [2025-03-10 11:41:08,826] [pool-1-thread-3] Initializing /data/generated/mri-stack1.pcx: [testng] [2025-03-10 11:41:08,836] [pool-1-thread-10] Initializing /data/generated/mri-stack24.pcx: [testng] [2025-03-10 11:41:08,851] [pool-1-thread-12] Initializing /data/generated/mri-stack21.pcx: [testng] [2025-03-10 11:41:08,861] [pool-1-thread-8] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2025-03-10 11:41:08,872] [pool-1-thread-11] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2025-03-10 11:41:09,578] [pool-1-thread-12] Initializing /data/generated/mri-stack25.pcx: [testng] [2025-03-10 11:41:09,593] [pool-1-thread-10] Initializing /data/generated/mri-stack26.pcx: [testng] [2025-03-10 11:41:09,615] [pool-1-thread-9] Initializing /data/generated/mri-stack9.pcx: [testng] [2025-03-10 11:41:09,627] [pool-1-thread-7] Initializing /data/generated/mri-stack14.pcx: [testng] [2025-03-10 11:41:09,642] [pool-1-thread-5] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2025-03-10 11:41:09,657] [pool-1-thread-3] Initializing /data/generated/mri-stack6.pcx: [testng] [2025-03-10 11:41:09,669] [pool-1-thread-1] Initializing /data/generated/mri-stack12.pcx: [testng] [2025-03-10 11:41:09,692] [pool-1-thread-2] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2025-03-10 11:41:10,092] [pool-1-thread-6] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2025-03-10 11:41:10,139] [pool-1-thread-11] Initializing /data/generated/mri-stack10.pcx: [testng] [2025-03-10 11:41:10,184] [pool-1-thread-8] Initializing /data/generated/mri-stack0.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 16 seconds Finished: SUCCESS