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Started by upstream project "BIOFORMATS-test-repo" build number 371 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins3360406561897266237.sh + '[' zip = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_58982_merge_ci -v /uod/idr/repos/curated/zip:/data -v /uod/idr-scratch/merge-ci/curated/zip:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 11:43:42,322 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 11:43:42,324 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 11:43:42,324 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:43:42,325 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:43:42,325 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:43:42,325 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:43:42,325 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:43:42,325 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:43:42,326 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:43:42,326 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:43:42,326 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:43:42,326 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:43:42,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:43:42,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:43:42,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:43:42,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:43:42,583 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:43:42,583 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:43:42,583 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:43:42,584 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:43:42,584 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 11:43:42,585 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 11:43:42,585 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 259 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-10 11:43:42,594] [main] java.version = 1.8.0_342 [testng] 11:43:42,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:43:42,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:43:42,645 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-10_11-43-42.log] [testng] 11:43:42,647 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-10 11:43:42,649] [main] testng.directory = /data [testng] [2025-03-10 11:43:42,649] [main] testng.configDirectory = /config [testng] [2025-03-10 11:43:42,661] [main] testng.multiplier = 1.0 [testng] [2025-03-10 11:43:42,661] [main] testng.in-memory = false [testng] [2025-03-10 11:43:42,661] [main] testng.allow-missing = false [testng] [2025-03-10 11:43:42,661] [main] user.language = fr [testng] [2025-03-10 11:43:42,662] [main] user.country = FR [testng] [2025-03-10 11:43:42,662] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-10 11:43:43,711] [main] ---------------------------------------- [testng] [2025-03-10 11:43:43,711] [main] Total files: 22 [testng] [2025-03-10 11:43:43,711] [main] Scan time: 1.049 s (47 ms/file) [testng] [2025-03-10 11:43:43,711] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 22 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-10 11:45:56,761] [pool-1-thread-1] Initializing /data/samples/sdub.zip: [testng] 11:45:56,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:45:56,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:45:56,763 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-10_11-45-56.log] [testng] 11:45:56,763 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6888dc4c - End of configuration. [testng] [2025-03-10 11:45:57,918] [pool-1-thread-12] Initializing /data/imagej/mri-stack.zip: [testng] 11:45:57,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:45:57,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:45:57,919 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-10_11-45-57.log] [testng] 11:45:57,920 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46f87f2c - End of configuration. [testng] [2025-03-10 11:46:01,480] [pool-1-thread-11] Initializing /data/imagej/hela-cells.zip: [testng] 11:46:01,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:46:01,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:46:01,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-10_11-46-01.log] [testng] 11:46:01,481 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72fc54a2 - End of configuration. [testng] [2025-03-10 11:46:05,817] [pool-1-thread-10] Initializing /data/imagej/watershed-animation.zip: [testng] 11:46:05,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:46:05,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:46:05,818 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-10_11-46-05.log] [testng] 11:46:05,818 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a9b014d - End of configuration. [testng] [2025-03-10 11:46:08,865] [pool-1-thread-9] Initializing /data/imagej/4D-Stack(256x256x20x10).zip: [testng] 11:46:08,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:46:08,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:46:08,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-10_11-46-08.log] [testng] 11:46:08,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c27957a - End of configuration. [testng] [2025-03-10 11:46:19,856] [pool-1-thread-8] Initializing /data/imagej/gel-electrophoresis.zip: [testng] 11:46:19,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:46:19,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:46:19,857 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-10_11-46-19.log] [testng] 11:46:19,857 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f1bfbbd - End of configuration. [testng] [2025-03-10 11:46:23,911] [pool-1-thread-7] Initializing /data/imagej/cheetah_256_8.tif.zip: [testng] 11:46:23,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:46:23,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:46:23,912 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-10_11-46-23.log] [testng] 11:46:23,912 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bf5aefc - End of configuration. [testng] [2025-03-10 11:46:27,473] [pool-1-thread-6] Initializing /data/imagej/xrays.zip: [testng] 11:46:27,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:46:27,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:46:27,474 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-10_11-46-27.log] [testng] 11:46:27,474 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4de9a921 - End of configuration. [testng] [2025-03-10 11:46:29,735] [pool-1-thread-5] Initializing /data/imagej/confocal-stack.zip: [testng] 11:46:29,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:46:29,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:46:29,736 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-10_11-46-29.log] [testng] 11:46:29,736 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7145c315 - End of configuration. [testng] [2025-03-10 11:46:43,198] [pool-1-thread-4] Initializing /data/imagej/FluorescentCells.zip: [testng] 11:46:43,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:46:43,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:46:43,199 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-10_11-46-43.log] [testng] 11:46:43,199 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ad47c4a - End of configuration. [testng] [2025-03-10 11:46:46,776] [pool-1-thread-3] Initializing /data/imagej/fat-cells.zip: [testng] 11:46:46,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:46:46,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:46:46,777 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-10_11-46-46.log] [testng] 11:46:46,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e13e17a - End of configuration. [testng] [2025-03-10 11:46:52,695] [pool-1-thread-2] Initializing /data/imagej/Rat_Hippocampal_Neuron2.zip: [testng] 11:46:52,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:46:52,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:46:52,695 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-10_11-46-52.log] [testng] 11:46:52,696 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40172171 - End of configuration. [testng] [2025-03-10 11:47:15,915] [pool-1-thread-1] Initializing /data/imagej/se3.zip: [testng] [2025-03-10 11:47:45,636] [pool-1-thread-6] Initializing /data/imagej/RatBrain.zip: [testng] [2025-03-10 11:47:52,973] [pool-1-thread-10] Initializing /data/imagej/blood-brain-barrier.zip: [testng] [2025-03-10 11:48:04,190] [pool-1-thread-12] Initializing /data/imagej/Rat_Hippocampal_Neuron.zip: [testng] [2025-03-10 11:48:14,933] [pool-1-thread-4] Initializing /data/imagej/scala-media.zip: [testng] [2025-03-10 11:48:24,137] [pool-1-thread-7] Initializing /data/imagej/confocal-series.zip: [testng] [2025-03-10 11:48:47,646] [pool-1-thread-11] Initializing /data/imagej/3D_Chromosome.zip: [testng] [2025-03-10 11:48:57,658] [pool-1-thread-2] Initializing /data/imagej/flybrain.zip: [testng] [2025-03-10 11:49:08,212] [pool-1-thread-6] Initializing /data/imagej/m51.zip: [testng] [2025-03-10 11:49:11,478] [pool-1-thread-4] Initializing /data/samples/bat-cochlea-volume.zip: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1166, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 minutes 9 seconds Finished: SUCCESS