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Started by upstream project "BIOFORMATS-test-repo" build number 371 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins14627837146440740919.sh + '[' specs = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_58987_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 11:47:25,511 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 11:47:25,513 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 11:47:25,513 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:47:25,514 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:47:25,514 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:47:25,514 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:47:25,514 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:47:25,514 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:47:25,515 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:47:25,515 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:47:25,515 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:47:25,515 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:47:25,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:47:25,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:47:25,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:47:25,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:47:25,768 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:47:25,768 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:47:25,769 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:47:25,769 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:47:25,769 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 11:47:25,770 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 11:47:25,770 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 255 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-10 11:47:25,779] [main] java.version = 1.8.0_342 [testng] 11:47:25,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:47:25,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:47:25,826 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-10_11-47-25.log] [testng] 11:47:25,827 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-10 11:47:25,829] [main] testng.directory = /data [testng] [2025-03-10 11:47:25,829] [main] testng.configDirectory = /config [testng] [2025-03-10 11:47:25,841] [main] testng.multiplier = 1.0 [testng] [2025-03-10 11:47:25,842] [main] testng.in-memory = false [testng] [2025-03-10 11:47:25,842] [main] testng.allow-missing = false [testng] [2025-03-10 11:47:25,842] [main] user.language = fr [testng] [2025-03-10 11:47:25,842] [main] user.country = FR [testng] [2025-03-10 11:47:25,842] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-10 11:51:33,806] [main] ---------------------------------------- [testng] [2025-03-10 11:51:33,806] [main] Total files: 226 [testng] [2025-03-10 11:51:33,806] [main] Scan time: 247.964 s (1097 ms/file) [testng] [2025-03-10 11:51:33,806] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-10 11:54:36,049] [pool-1-thread-1] Initializing /data/fluoview/Sample_XT.tif: [testng] 11:54:36,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:54:36,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:54:36,051 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-10_11-54-36.log] [testng] 11:54:36,051 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bbdad97 - End of configuration. [testng] [2025-03-10 11:54:36,396] [pool-1-thread-12] Initializing /data/fluoview/SpineAnimation.avi: [testng] 11:54:36,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:54:36,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:54:36,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-10_11-54-36.log] [testng] 11:54:36,397 |-INFO in ch.qos.logback.core.sift.SiftProcessor@566b1051 - End of configuration. [testng] [2025-03-10 11:54:36,504] [pool-1-thread-11] Initializing /data/iplab/Blend_Fitc.IPL: [testng] 11:54:36,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:54:36,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:54:36,505 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-10_11-54-36.log] [testng] 11:54:36,505 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59f08200 - End of configuration. [testng] [2025-03-10 11:54:36,556] [pool-1-thread-10] Initializing /data/iplab/16Bit XRay.IPL: [testng] 11:54:36,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:54:36,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:54:36,557 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-10_11-54-36.log] [testng] 11:54:36,558 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bbeb850 - End of configuration. [testng] [2025-03-10 11:54:36,607] [pool-1-thread-9] Initializing /data/iplab/Color Histology.IPL: [testng] 11:54:36,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:54:36,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:54:36,608 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-10_11-54-36.log] [testng] 11:54:36,608 |-INFO in ch.qos.logback.core.sift.SiftProcessor@783ff9ea - End of configuration. [testng] [2025-03-10 11:54:36,659] [pool-1-thread-8] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] 11:54:36,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:54:36,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:54:36,660 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-10_11-54-36.log] [testng] 11:54:36,661 |-INFO in ch.qos.logback.core.sift.SiftProcessor@761dc802 - End of configuration. [testng] [2025-03-10 11:54:36,938] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] 11:54:36,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:54:36,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:54:36,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-10_11-54-36.log] [testng] 11:54:36,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b8727a6 - End of configuration. [testng] [2025-03-10 11:54:37,200] [pool-1-thread-6] Initializing /data/iplab/Blend_Final.IPL: [testng] 11:54:37,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:54:37,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:54:37,200 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-10_11-54-37.log] [testng] 11:54:37,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42e16526 - End of configuration. [testng] [2025-03-10 11:54:37,257] [pool-1-thread-5] Initializing /data/iplab/Color Image.IPL: [testng] 11:54:37,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:54:37,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:54:37,258 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-10_11-54-37.log] [testng] 11:54:37,258 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6dc2b107 - End of configuration. [testng] [2025-03-10 11:54:37,308] [pool-1-thread-4] Initializing /data/iplab/3t3 Cell.IPL: [testng] 11:54:37,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:54:37,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:54:37,309 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-10_11-54-37.log] [testng] 11:54:37,309 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40a8cc1e - End of configuration. [testng] [2025-03-10 11:54:37,351] [pool-1-thread-3] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] 11:54:37,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:54:37,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:54:37,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-10_11-54-37.log] [testng] 11:54:37,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61fbdb7 - End of configuration. [testng] [2025-03-10 11:54:37,396] [pool-1-thread-2] Initializing /data/fluoview/SpineAnimation.tif: [testng] 11:54:37,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:54:37,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:54:37,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-10_11-54-37.log] [testng] 11:54:37,398 |-INFO in ch.qos.logback.core.sift.SiftProcessor@447a000b - End of configuration. [testng] [2025-03-10 11:54:39,644] [pool-1-thread-9] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [2025-03-10 11:54:39,706] [pool-1-thread-5] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] [2025-03-10 11:54:39,758] [pool-1-thread-4] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] [2025-03-10 11:54:40,044] [pool-1-thread-10] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] [2025-03-10 11:54:40,343] [pool-1-thread-6] Initializing /data/iplab/Blend_Tritc.IPL: [testng] [2025-03-10 11:54:40,398] [pool-1-thread-11] Initializing /data/iplab/Chromosomes.IPL: [testng] [2025-03-10 11:54:40,469] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] [2025-03-10 11:54:40,791] [pool-1-thread-12] Initializing /data/iplab/Blend_Dapi.IPL: [testng] [2025-03-10 11:54:41,357] [pool-1-thread-7] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] [2025-03-10 11:54:41,854] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2025-03-10 11:54:42,283] [pool-1-thread-2] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2025-03-10 11:54:42,536] [pool-1-thread-1] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] [2025-03-10 11:54:42,914] [pool-1-thread-11] Initializing /data/fluoview/Sample_XYT.TIF: [testng] [2025-03-10 11:54:43,304] [pool-1-thread-5] Initializing /data/iplab/Actin.IPL: [testng] [2025-03-10 11:54:43,371] [pool-1-thread-9] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2025-03-10 11:54:43,739] [pool-1-thread-12] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 7 minutes 36 seconds Finished: SUCCESS