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Started by upstream project "BIOFORMATS-test-repo" build number 371 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins2742383481182933134.sh + '[' pict = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_59011_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 12:08:28,142 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 12:08:28,144 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 12:08:28,144 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:08:28,145 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:08:28,145 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 12:08:28,145 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 12:08:28,146 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 12:08:28,146 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:08:28,146 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:08:28,146 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 12:08:28,146 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 12:08:28,146 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 12:08:28,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 12:08:28,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 12:08:28,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 12:08:28,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 12:08:28,431 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 12:08:28,431 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 12:08:28,432 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 12:08:28,432 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 12:08:28,432 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 12:08:28,433 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 12:08:28,433 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 287 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-10 12:08:28,443] [main] java.version = 1.8.0_342 [testng] 12:08:28,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 12:08:28,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:08:28,492 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-10_12-08-28.log] [testng] 12:08:28,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-10 12:08:28,495] [main] testng.directory = /data [testng] [2025-03-10 12:08:28,496] [main] testng.configDirectory = /config [testng] [2025-03-10 12:08:28,508] [main] testng.multiplier = 1.0 [testng] [2025-03-10 12:08:28,508] [main] testng.in-memory = false [testng] [2025-03-10 12:08:28,509] [main] testng.allow-missing = false [testng] [2025-03-10 12:08:28,509] [main] user.language = fr [testng] [2025-03-10 12:08:28,509] [main] user.country = FR [testng] [2025-03-10 12:08:28,509] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-10 12:08:29,707] [main] ---------------------------------------- [testng] [2025-03-10 12:08:29,707] [main] Total files: 25 [testng] [2025-03-10 12:08:29,707] [main] Scan time: 1.198 s (47 ms/file) [testng] [2025-03-10 12:08:29,707] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-10 12:08:37,831] [pool-1-thread-1] Initializing /data/misc/planet.png: [testng] 12:08:37,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 12:08:37,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:08:37,833 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-10_12-08-37.log] [testng] 12:08:37,834 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4869d715 - End of configuration. [testng] [2025-03-10 12:08:37,881] [pool-1-thread-12] Initializing /data/brian/images/GRN.PCT: [testng] 12:08:37,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 12:08:37,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:08:37,882 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-10_12-08-37.log] [testng] 12:08:37,883 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dc6efe6 - End of configuration. [testng] [2025-03-10 12:08:38,220] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B24.PCT: [testng] 12:08:38,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 12:08:38,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:08:38,221 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-10_12-08-38.log] [testng] 12:08:38,221 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cd543b - End of configuration. [testng] [2025-03-10 12:08:38,545] [pool-1-thread-10] Initializing /data/jqd/mire32.pict: [testng] 12:08:38,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 12:08:38,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:08:38,546 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-10_12-08-38.log] [testng] 12:08:38,546 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3285adc7 - End of configuration. [testng] [2025-03-10 12:08:38,903] [pool-1-thread-9] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] 12:08:38,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 12:08:38,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:08:38,904 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-10_12-08-38.log] [testng] 12:08:38,904 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7474713d - End of configuration. [testng] [2025-03-10 12:08:39,218] [pool-1-thread-8] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 12:08:39,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 12:08:39,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:08:39,219 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-10_12-08-39.log] [testng] 12:08:39,220 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47bd55a2 - End of configuration. [testng] [2025-03-10 12:08:39,645] [pool-1-thread-7] Initializing /data/wayne/PotatoMeristem.pict: [testng] 12:08:39,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 12:08:39,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:08:39,646 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-10_12-08-39.log] [testng] 12:08:39,646 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76a818e - End of configuration. [testng] [2025-03-10 12:08:40,002] [pool-1-thread-6] Initializing /data/misc/planet2.pict: [testng] 12:08:40,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 12:08:40,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:08:40,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-10_12-08-40.log] [testng] 12:08:40,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b2423e4 - End of configuration. [testng] [2025-03-10 12:08:40,310] [pool-1-thread-5] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 12:08:40,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 12:08:40,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:08:40,311 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-10_12-08-40.log] [testng] 12:08:40,312 |-INFO in ch.qos.logback.core.sift.SiftProcessor@186f9126 - End of configuration. [testng] [2025-03-10 12:08:40,705] [pool-1-thread-4] Initializing /data/brian/images/WHT.PCT: [testng] 12:08:40,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 12:08:40,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:08:40,705 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-10_12-08-40.log] [testng] 12:08:40,706 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bd297f9 - End of configuration. [testng] [2025-03-10 12:08:40,983] [pool-1-thread-3] Initializing /data/brian/images/FLAG_RGB.pct: [testng] 12:08:40,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 12:08:40,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:08:40,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-10_12-08-40.log] [testng] 12:08:40,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74c8119f - End of configuration. [testng] [2025-03-10 12:08:41,263] [pool-1-thread-2] Initializing /data/brian/images/BLU.PCT: [testng] 12:08:41,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 12:08:41,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:08:41,264 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-10_12-08-41.log] [testng] 12:08:41,265 |-INFO in ch.qos.logback.core.sift.SiftProcessor@121419fd - End of configuration. [testng] [2025-03-10 12:08:43,638] [pool-1-thread-1] Initializing /data/brian/images/VENUS.pct: [testng] [2025-03-10 12:08:44,887] [pool-1-thread-3] Initializing /data/brian/images/RED.PCT: [testng] [2025-03-10 12:08:45,191] [pool-1-thread-10] Initializing /data/misc/swlogo.pict: [testng] [2025-03-10 12:08:45,484] [pool-1-thread-11] Initializing /data/jqd/32bit.pict: [testng] [2025-03-10 12:08:45,760] [pool-1-thread-4] Initializing /data/jqd/sixteenBit.pict: [testng] [2025-03-10 12:08:46,042] [pool-1-thread-2] Initializing /data/brian/images/BLK.PCT: [testng] [2025-03-10 12:08:46,341] [pool-1-thread-12] Initializing /data/misc/planet.pict: [testng] [2025-03-10 12:08:46,640] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B32.pct: [testng] [2025-03-10 12:08:47,218] [pool-1-thread-7] Initializing /data/jqd/mireSixteen.pict: [testng] [2025-03-10 12:08:47,607] [pool-1-thread-8] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] [2025-03-10 12:08:47,927] [pool-1-thread-5] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [2025-03-10 12:08:48,233] [pool-1-thread-9] Initializing /data/brian/images/TRU256.PCT: [testng] [2025-03-10 12:08:49,375] [pool-1-thread-1] Initializing /data/brian/images/YEL.PCT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 26 seconds Finished: SUCCESS