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Started by upstream project "BIOFORMATS-test-repo" build number 371 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins2391090255787061256.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_59045_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 13:03:13,485 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 13:03:13,488 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 13:03:13,488 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 13:03:13,490 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 13:03:13,490 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 13:03:13,490 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 13:03:13,490 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 13:03:13,490 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 13:03:13,491 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 13:03:13,491 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 13:03:13,491 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 13:03:13,491 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 13:03:13,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 13:03:13,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 13:03:13,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 13:03:13,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 13:03:13,754 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 13:03:13,755 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 13:03:13,755 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 13:03:13,755 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 13:03:13,755 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 13:03:13,756 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 13:03:13,756 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 265 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-10 13:03:13,767] [main] java.version = 1.8.0_342 [testng] 13:03:13,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 13:03:13,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:03:13,816 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-10_13-03-13.log] [testng] 13:03:13,818 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-10 13:03:13,820] [main] testng.directory = /data [testng] [2025-03-10 13:03:13,820] [main] testng.configDirectory = /config [testng] [2025-03-10 13:03:13,833] [main] testng.multiplier = 1.0 [testng] [2025-03-10 13:03:13,833] [main] testng.in-memory = false [testng] [2025-03-10 13:03:13,833] [main] testng.allow-missing = false [testng] [2025-03-10 13:03:13,834] [main] user.language = fr [testng] [2025-03-10 13:03:13,834] [main] user.country = FR [testng] [2025-03-10 13:03:13,834] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-10 13:21:19,181] [main] ---------------------------------------- [testng] [2025-03-10 13:21:19,181] [main] Total files: 14121 [testng] [2025-03-10 13:21:19,181] [main] Scan time: 1085.347 s (76 ms/file) [testng] [2025-03-10 13:21:19,181] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 261 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-10 13:42:44,957] [pool-1-thread-1] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] 13:42:44,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 13:42:44,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:42:44,959 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-10_13-42-44.log] [testng] 13:42:44,959 |-INFO in ch.qos.logback.core.sift.SiftProcessor@275e6799 - End of configuration. [testng] [2025-03-10 13:42:45,999] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] 13:42:46,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 13:42:46,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:42:46,000 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-10_13-42-46.log] [testng] 13:42:46,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37cd8952 - End of configuration. [testng] [2025-03-10 13:42:47,131] [pool-1-thread-11] Initializing /data/thomas/test.tif: [testng] 13:42:47,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 13:42:47,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:42:47,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-10_13-42-47.log] [testng] 13:42:47,133 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38edefbc - End of configuration. [testng] [2025-03-10 13:42:48,195] [pool-1-thread-10] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_4well/Dish2_w1FRET_s1_t1.TIF: [testng] 13:42:48,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 13:42:48,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:42:48,195 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-10_13-42-48.log] [testng] 13:42:48,196 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65aaa581 - End of configuration. [testng] [2025-03-10 13:42:55,645] [pool-1-thread-9] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] 13:42:55,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 13:42:55,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:42:55,646 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-10_13-42-55.log] [testng] 13:42:55,646 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a016acc - End of configuration. [testng] [2025-03-10 13:42:56,793] [pool-1-thread-8] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] 13:42:56,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 13:42:56,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:42:56,794 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-10_13-42-56.log] [testng] 13:42:56,794 |-INFO in ch.qos.logback.core.sift.SiftProcessor@628f2492 - End of configuration. [testng] [2025-03-10 13:42:57,805] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR5_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] 13:42:57,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 13:42:57,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:42:57,806 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-10_13-42-57.log] [testng] 13:42:57,806 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1496f4f8 - End of configuration. [testng] [2025-03-10 13:43:00,207] [pool-1-thread-6] Initializing /data/jcb/201008090/Color Combine.stk: [testng] 13:43:00,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 13:43:00,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:43:00,208 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-10_13-43-00.log] [testng] 13:43:00,208 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a6d8845 - End of configuration. [testng] [2025-03-10 13:43:01,281] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] 13:43:01,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 13:43:01,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:43:01,282 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-10_13-43-01.log] [testng] 13:43:01,282 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2612fa7f - End of configuration. [testng] [2025-03-10 13:43:02,339] [pool-1-thread-4] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_4well/Dish8_w1FRET_s1_t1.TIF: [testng] 13:43:02,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 13:43:02,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:43:02,340 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-10_13-43-02.log] [testng] 13:43:02,340 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fca2938 - End of configuration. [testng] [2025-03-10 13:43:09,894] [pool-1-thread-3] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] 13:43:09,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 13:43:09,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:43:09,895 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-10_13-43-09.log] [testng] 13:43:09,895 |-INFO in ch.qos.logback.core.sift.SiftProcessor@346f0e54 - End of configuration. [testng] [2025-03-10 13:43:11,427] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_Vec_ISOto5HT_35mm/Dish1_w1FRET_t1.TIF: [testng] 13:43:11,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 13:43:11,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:43:11,428 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-10_13-43-11.log] [testng] 13:43:11,429 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e97026d - End of configuration. [testng] [2025-03-10 13:43:20,918] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2025-03-10 13:43:22,288] [pool-1-thread-5] Initializing /data/steve/Experiment2.stk: [testng] [2025-03-10 13:43:23,562] [pool-1-thread-11] Initializing /data/cumol-test-series/23.001: [testng] [2025-03-10 13:43:25,034] [pool-1-thread-1] Initializing /data/graham/G_Wright raw.stk: [testng] [2025-03-10 13:43:26,126] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1E_ISOto5HT_35mm/Dish2_w1FRET_t1.TIF: [testng] [2025-03-10 13:43:28,988] [pool-1-thread-3] Initializing /data/chris/Stream-2(partial).stk: [testng] [2025-03-10 13:43:36,609] [pool-1-thread-12] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_Vec_ISOtoDA_4well/Dish5_w1FRET_s1_t1.TIF: [testng] [2025-03-10 13:43:44,754] [pool-1-thread-1] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2025-03-10 13:43:46,394] [pool-1-thread-5] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2025-03-10 13:43:47,790] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2025-03-10 13:43:49,220] [pool-1-thread-9] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-03-10 13:44:00,144] [pool-1-thread-8] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2025-03-10 13:44:05,506] [pool-1-thread-3] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2025-03-10 13:44:10,459] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2025-03-10 13:44:14,044] [pool-1-thread-3] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2025-03-10 13:44:15,380] [pool-1-thread-8] Initializing /data/ascb/mt aim.tif: [testng] [2025-03-10 13:44:17,062] [pool-1-thread-5] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR1D_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-03-10 13:44:21,892] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2025-03-10 13:44:32,628] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2025-03-10 13:44:34,299] [pool-1-thread-1] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_Vec_ISOto5HT_35mmdish/Dish3_w1FRET_t1.TIF: [testng] [2025-03-10 13:44:37,835] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2025-03-10 13:44:46,720] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_HTR1F_ISOto5HT_4well/Dish6_w1FRET_s1_t1.TIF: [testng] [2025-03-10 13:45:19,356] [pool-1-thread-3] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2025-03-10 13:45:26,651] [pool-1-thread-11] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD4_ISOtoDA_4well/Dish4_w1FRET_s1_t1.TIF: [testng] [2025-03-10 13:50:37,798] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2025-03-10 13:50:40,446] [pool-1-thread-2] Initializing /data/grant/XYZ_Image.STK: [testng] [2025-03-10 13:50:51,999] [pool-1-thread-6] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2025-03-10 13:50:57,316] [pool-1-thread-7] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2025-03-10 13:51:01,457] [pool-1-thread-2] Initializing /data/samples/10xcalib.stk: [testng] [2025-03-10 13:51:06,095] [pool-1-thread-6] Initializing /data/grant/X.STK: [testng] [2025-03-10 13:51:14,312] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2025-03-10 13:51:16,975] [pool-1-thread-2] Used files list does not include base file [testng] [2025-03-10 13:51:21,011] [pool-1-thread-9] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. 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[pool-1-thread-2] Initializing /data/alex/Selected FITC.stk: [testng] [2025-03-10 13:52:33,637] [pool-1-thread-5] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_Vec_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-03-10 13:52:44,554] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_Vec_ISOto5HT_35mm/Dish2_w1FRET_t1.TIF: [testng] [2025-03-10 13:52:51,615] [pool-1-thread-3] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2025-03-10 13:53:22,957] [pool-1-thread-9] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_HTR1E_ISOto5HT_4well/Dish4_w1FRET_s1_t1.TIF: [testng] [2025-03-10 13:58:25,145] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2025-03-10 13:59:03,421] [pool-1-thread-7] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2025-03-10 13:59:12,611] [pool-1-thread-7] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2025-03-10 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[testng] [2025-03-10 14:23:31,266] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2025-03-10 14:23:33,322] [pool-1-thread-6] Used files list does not include base file [testng] [2025-03-10 14:23:35,196] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2025-03-10 14:23:37,389] [pool-1-thread-10] Used files list does not include base file [testng] [2025-03-10 14:24:46,909] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-03-10 14:24:55,082] [pool-1-thread-10] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2025-03-10 14:25:06,741] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2025-03-10 14:25:17,880] [pool-1-thread-10] Initializing /data/qa-16915/m-04-488.tif: [testng] [2025-03-10 14:25:30,426] [pool-1-thread-10] Initializing 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14:27:33,395] [pool-1-thread-1] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211111_HTR5_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-03-10 14:27:43,049] [pool-1-thread-5] Initializing /data/qa-16915/m-02.tif: [testng] [2025-03-10 14:27:45,262] [pool-1-thread-7] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2025-03-10 14:27:48,953] [pool-1-thread-10] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_4well/Dish1(ISO200nM)_w1FRET_s1_t1.TIF: [testng] [2025-03-10 14:28:10,729] [pool-1-thread-5] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1E_ISOto5HT_35mm/Dish1_w1FRET_t1.TIF: [testng] [2025-03-10 14:28:20,390] [pool-1-thread-7] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2025-03-10 14:30:13,006] [pool-1-thread-12] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2025-03-10 14:30:26,482] [pool-1-thread-12] Initializing /data/steve/Experiment2.tif: [testng] [2025-03-10 14:30:33,652] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2025-03-10 14:30:42,464] [pool-1-thread-12] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2025-03-10 14:30:50,178] [pool-1-thread-9] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2025-03-10 14:31:05,951] [pool-1-thread-12] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2025-03-10 14:31:11,840] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2025-03-10 14:31:14,293] [pool-1-thread-12] Used files list does not include base file [testng] [2025-03-10 14:31:25,188] [pool-1-thread-7] Initializing /data/samples/zserEight.stk: [testng] [2025-03-10 14:31:36,860] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC 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[pool-1-thread-9] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2025-03-10 14:33:10,921] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211123_HTR1A_ISOto5HT_4well/Dish1_w1FRET_s1_t1.TIF: [testng] [2025-03-10 14:33:32,111] [pool-1-thread-12] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2025-03-10 14:33:44,037] [pool-1-thread-8] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2025-03-10 14:33:55,786] [pool-1-thread-8] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2025-03-10 14:34:07,666] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2025-03-10 14:34:20,308] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2025-03-10 14:34:23,382] [pool-1-thread-6] Used files list does not include base file [testng] [2025-03-10 14:35:13,368] [pool-1-thread-8] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2025-03-10 14:35:24,834] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2025-03-10 14:35:52,639] [pool-1-thread-6] Initializing /data/ascb/C9 Stack.tif: [testng] [2025-03-10 14:35:59,303] [pool-1-thread-4] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_Vec_ISOto5HT_35mmdish/5HT/Dish1_w1FRET_t1.TIF: [testng] [2025-03-10 14:36:10,427] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2025-03-10 14:36:21,582] [pool-1-thread-6] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2025-03-10 14:36:32,245] [pool-1-thread-6] Initializing /data/josh/2101to600astk.stk: [testng] [2025-03-10 14:37:36,957] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2025-03-10 14:37:38,968] [pool-1-thread-1] Used files list does not include 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14:43:41,376] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-10 14:43:46,865] [pool-1-thread-4] Initializing /data/samples/zseries.stk: [testng] [2025-03-10 14:43:54,834] [pool-1-thread-4] Initializing /data/josh/2101to800.stk: [testng] [2025-03-10 14:44:06,979] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2025-03-10 14:44:33,241] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2025-03-10 14:44:58,929] [pool-1-thread-1] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_Vec_ISOto5HT_35mmdish/HCl/Dish2_w1FRET_t1.TIF: [testng] [2025-03-10 14:45:03,207] [pool-1-thread-4] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1F_ISOto5HT_35mm/Dish1_w1FRET_t1.TIF: [testng] [2025-03-10 14:45:19,957] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full 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[testng] [2025-03-10 14:51:00,731] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2025-03-10 14:51:14,146] [pool-1-thread-2] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2025-03-10 14:51:21,558] [pool-1-thread-2] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2025-03-10 14:51:24,432] [pool-1-thread-1] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2025-03-10 14:51:26,062] [pool-1-thread-4] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2025-03-10 14:51:33,039] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2025-03-10 14:51:34,356] [pool-1-thread-1] Used files list does not include base file [testng] [2025-03-10 14:51:35,706] [pool-1-thread-4] Initializing 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Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211111_Vec_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-03-10 14:53:11,229] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_Vec_ISOtoDA_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-03-10 14:53:44,381] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_HTR1F_ISOto5HT_4well/Dish5_w1FRET_s1_t1.TIF: [testng] [2025-03-10 14:56:02,350] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2025-03-10 14:56:54,262] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2025-03-10 14:57:20,859] [pool-1-thread-8] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2025-03-10 14:57:37,742] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2025-03-10 14:57:41,844] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211123_HTR5_ISOto5HT_4well/Dish3_w1FRET_s1_t1.TIF: [testng] [2025-03-10 14:58:00,558] [pool-1-thread-4] Initializing /data/samples/10xcalib.tif: [testng] [2025-03-10 14:58:08,246] [pool-1-thread-4] Initializing /data/jae/RGB_s34.tif: [testng] [2025-03-10 14:58:19,450] [pool-1-thread-4] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2025-03-10 14:58:51,065] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2025-03-10 14:58:58,775] [pool-1-thread-10] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR1D_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-03-10 14:59:04,663] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2025-03-10 14:59:07,127] [pool-1-thread-4] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211111_Vec_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-03-10 14:59:12,525] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2025-03-10 14:59:16,523] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-10 14:59:21,124] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-10 14:59:35,371] [pool-1-thread-2] Initializing /data/ascb/mt mklp1.tif: [testng] [2025-03-10 14:59:40,147] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2025-03-10 14:59:44,934] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-10 15:00:10,221] [pool-1-thread-2] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2025-03-10 15:00:38,061] [pool-1-thread-2] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2025-03-10 15:00:46,439] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-10 15:00:54,315] [pool-1-thread-2] Initializing /data/ascb/C1 Stack.stk: [testng] [2025-03-10 15:01:03,326] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2025-03-10 15:01:05,294] [pool-1-thread-2] Used files list does not include base file [testng] [2025-03-10 15:02:23,975] [pool-1-thread-2] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2025-03-10 15:02:33,580] [pool-1-thread-2] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2025-03-10 15:02:38,190] [pool-1-thread-7] Initializing /data/qa-16915/m-04-561.tif: [testng] [2025-03-10 15:02:50,517] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2025-03-10 15:02:57,166] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_4well/Dish9_w1FRET_s1_t1.TIF: [testng] [2025-03-10 15:03:12,803] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] 18:27:09,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 18:27:09,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:27:09,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-10_18-27-09.log] [testng] 18:27:09,584 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ab52978 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 13833, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 324 minutes 1 second Finished: SUCCESS