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Started by upstream project "BIOFORMATS-test-repo" build number 371 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins5887795579163970142.sh + '[' ivision = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_59115_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 16:51:29,223 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 16:51:29,225 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 16:51:29,225 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 16:51:29,226 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 16:51:29,226 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 16:51:29,226 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 16:51:29,226 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 16:51:29,226 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 16:51:29,227 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 16:51:29,227 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 16:51:29,227 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 16:51:29,227 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 16:51:29,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 16:51:29,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 16:51:29,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 16:51:29,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 16:51:29,484 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 16:51:29,484 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 16:51:29,484 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 16:51:29,485 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 16:51:29,485 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 16:51:29,486 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 16:51:29,486 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 259 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-10 16:51:29,495] [main] java.version = 1.8.0_342 [testng] 16:51:29,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 16:51:29,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:51:29,543 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-10_16-51-29.log] [testng] 16:51:29,544 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-10 16:51:29,546] [main] testng.directory = /data [testng] [2025-03-10 16:51:29,546] [main] testng.configDirectory = /config [testng] [2025-03-10 16:51:29,559] [main] testng.multiplier = 1.0 [testng] [2025-03-10 16:51:29,559] [main] testng.in-memory = false [testng] [2025-03-10 16:51:29,559] [main] testng.allow-missing = false [testng] [2025-03-10 16:51:29,559] [main] user.language = fr [testng] [2025-03-10 16:51:29,559] [main] user.country = FR [testng] [2025-03-10 16:51:29,559] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-10 16:51:38,073] [main] ---------------------------------------- [testng] [2025-03-10 16:51:38,073] [main] Total files: 17 [testng] [2025-03-10 16:51:38,073] [main] Scan time: 8.514 s (500 ms/file) [testng] [2025-03-10 16:51:38,073] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 17 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-10 16:51:47,942] [pool-1-thread-1] Initializing /data/christopher/Color48 Copy.ipm: [testng] 16:51:47,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 16:51:47,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:51:47,944 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-10_16-51-47.log] [testng] 16:51:47,944 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a765516 - End of configuration. [testng] [2025-03-10 16:51:48,454] [pool-1-thread-12] Initializing /data/samples/16bit 320x256x1.ipm: [testng] 16:51:48,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 16:51:48,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:51:48,455 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-10_16-51-48.log] [testng] 16:51:48,455 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ae11f07 - End of configuration. [testng] [2025-03-10 16:51:48,926] [pool-1-thread-11] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm: [testng] 16:51:48,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 16:51:48,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:51:48,927 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-10_16-51-48.log] [testng] 16:51:48,927 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3745a934 - End of configuration. [testng] [2025-03-10 16:51:49,413] [pool-1-thread-10] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center: [testng] 16:51:49,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 16:51:49,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:51:49,414 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-10_16-51-49.log] [testng] 16:51:49,414 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2054219c - End of configuration. [testng] [2025-03-10 16:51:49,811] [pool-1-thread-9] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm: [testng] 16:51:49,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 16:51:49,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:51:49,812 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-10_16-51-49.log] [testng] 16:51:49,813 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1733e608 - End of configuration. [testng] [2025-03-10 16:51:50,210] [pool-1-thread-8] Initializing /data/samples/48bit 150x100x3.ipm: [testng] 16:51:50,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 16:51:50,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:51:50,211 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-10_16-51-50.log] [testng] 16:51:50,211 |-INFO in ch.qos.logback.core.sift.SiftProcessor@404248d - End of configuration. [testng] [2025-03-10 16:51:50,662] [pool-1-thread-7] Initializing /data/samples/24bit 300x200x3.ipm: [testng] 16:51:50,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 16:51:50,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:51:50,663 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-10_16-51-50.log] [testng] 16:51:50,663 |-INFO in ch.qos.logback.core.sift.SiftProcessor@290833ae - End of configuration. [testng] [2025-03-10 16:51:51,155] [pool-1-thread-6] Initializing /data/samples/16-bit 320x256x3.ipm: [testng] 16:51:51,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 16:51:51,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:51:51,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-10_16-51-51.log] [testng] 16:51:51,156 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e46156f - End of configuration. [testng] [2025-03-10 16:51:51,613] [pool-1-thread-5] Initializing /data/nigel/CD48_75_24hrColor.ipm: [testng] 16:51:51,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 16:51:51,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:51:51,614 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-10_16-51-51.log] [testng] 16:51:51,615 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a68bec7 - End of configuration. [testng] [2025-03-10 16:51:52,058] [pool-1-thread-4] Initializing /data/jcb/200810162/wt BA plus bio.ipm: [testng] 16:51:52,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 16:51:52,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:51:52,059 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-10_16-51-52.log] [testng] 16:51:52,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5537186b - End of configuration. [testng] [2025-03-10 16:51:52,558] [pool-1-thread-3] Initializing /data/samples/08Bit 320x256x1.ipm: [testng] 16:51:52,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 16:51:52,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:51:52,559 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-10_16-51-52.log] [testng] 16:51:52,560 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e2646df - End of configuration. [testng] [2025-03-10 16:51:52,996] [pool-1-thread-2] Initializing /data/samples/08Bit 320x256xthree.ipm: [testng] 16:51:52,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 16:51:52,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:51:52,997 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-10_16-51-52.log] [testng] 16:51:52,998 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44b4ab3e - End of configuration. [testng] [2025-03-10 16:51:59,858] [pool-1-thread-8] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm: [testng] [2025-03-10 16:52:00,374] [pool-1-thread-2] Initializing /data/jcb/200810162/wt ba no bio.ipm: [testng] [2025-03-10 16:52:00,852] [pool-1-thread-7] Initializing /data/jcb/200810162/mutBA plus bio.ipm: [testng] [2025-03-10 16:52:01,328] [pool-1-thread-11] Initializing /data/jcb/200810162/mut BA no bio.ipm: [testng] [2025-03-10 16:52:01,834] [pool-1-thread-5] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 901, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 43 seconds Finished: SUCCESS