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Started by upstream project "BIOFORMATS-test-repo" build number 371 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins16343325353841365045.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_59118_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 17:00:20,667 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 17:00:20,669 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 17:00:20,669 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 17:00:20,670 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 17:00:20,670 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 17:00:20,671 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 17:00:20,671 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 17:00:20,671 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 17:00:20,671 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 17:00:20,672 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 17:00:20,672 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 17:00:20,672 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 17:00:20,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 17:00:20,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 17:00:20,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 17:00:20,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 17:00:20,927 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 17:00:20,927 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 17:00:20,927 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 17:00:20,928 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 17:00:20,928 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 17:00:20,929 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 17:00:20,929 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 258 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-10 17:00:20,939] [main] java.version = 1.8.0_342 [testng] 17:00:20,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 17:00:20,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:00:20,987 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-10_17-00-20.log] [testng] 17:00:20,988 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-10 17:00:20,990] [main] testng.directory = /data [testng] [2025-03-10 17:00:20,990] [main] testng.configDirectory = /config [testng] [2025-03-10 17:00:21,003] [main] testng.multiplier = 1.0 [testng] [2025-03-10 17:00:21,004] [main] testng.in-memory = false [testng] [2025-03-10 17:00:21,004] [main] testng.allow-missing = false [testng] [2025-03-10 17:00:21,004] [main] user.language = fr [testng] [2025-03-10 17:00:21,004] [main] user.country = FR [testng] [2025-03-10 17:00:21,004] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-10 17:00:30,330] [main] ---------------------------------------- [testng] [2025-03-10 17:00:30,330] [main] Total files: 22 [testng] [2025-03-10 17:00:30,330] [main] Scan time: 9.326 s (423 ms/file) [testng] [2025-03-10 17:00:30,330] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-10 17:01:09,878] [pool-1-thread-1] Initializing /data/converted/clown8c.seq: [testng] 17:01:09,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 17:01:09,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:01:09,879 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-10_17-01-09.log] [testng] 17:01:09,879 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1228cc79 - End of configuration. [testng] [2025-03-10 17:01:11,072] [pool-1-thread-12] Initializing /data/converted/NESb_C2_TP7.seq: [testng] 17:01:11,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 17:01:11,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:01:11,073 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-10_17-01-11.log] [testng] 17:01:11,074 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30ee846f - End of configuration. [testng] [2025-03-10 17:01:12,251] [pool-1-thread-11] Initializing /data/converted/mitosis-test.tif: [testng] 17:01:12,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 17:01:12,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:01:12,252 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-10_17-01-12.log] [testng] 17:01:12,253 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55f0413c - End of configuration. [testng] [2025-03-10 17:01:15,044] [pool-1-thread-10] Initializing /data/converted/clown.seq: [testng] 17:01:15,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 17:01:15,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:01:15,046 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-10_17-01-15.log] [testng] 17:01:15,046 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45e9a859 - End of configuration. [testng] [2025-03-10 17:01:16,221] [pool-1-thread-9] Initializing /data/alex/AFAset0003.ips: [testng] 17:01:16,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 17:01:16,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:01:16,222 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-10_17-01-16.log] [testng] 17:01:16,223 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60805f0a - End of configuration. [testng] [2025-03-10 17:01:17,320] [pool-1-thread-8] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] 17:01:17,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 17:01:17,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:01:17,322 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-10_17-01-17.log] [testng] 17:01:17,322 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ac8d95c - End of configuration. [testng] [2025-03-10 17:01:19,687] [pool-1-thread-7] Initializing /data/samples/PROBE.TIF: [testng] 17:01:19,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 17:01:19,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:01:19,688 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-10_17-01-19.log] [testng] 17:01:19,689 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21053a6f - End of configuration. [testng] [2025-03-10 17:01:20,702] [pool-1-thread-6] Initializing /data/converted/dub01.ipw: [testng] 17:01:20,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 17:01:20,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:01:20,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-10_17-01-20.log] [testng] 17:01:20,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ba201e5 - End of configuration. [testng] [2025-03-10 17:01:21,784] [pool-1-thread-5] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 17:01:21,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 17:01:21,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:01:21,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-10_17-01-21.log] [testng] 17:01:21,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@585393a0 - End of configuration. [testng] [2025-03-10 17:01:22,768] [pool-1-thread-4] Initializing /data/xiuwen/head2.seq: [testng] 17:01:22,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 17:01:22,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:01:22,769 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-10_17-01-22.log] [testng] 17:01:22,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@111974d4 - End of configuration. [testng] [2025-03-10 17:01:23,923] [pool-1-thread-3] Initializing /data/converted/clown8c.ipw: [testng] 17:01:23,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 17:01:23,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:01:23,923 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-10_17-01-23.log] [testng] 17:01:23,924 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f01c0f - End of configuration. [testng] [2025-03-10 17:01:25,175] [pool-1-thread-2] Initializing /data/converted/dub01.seq: [testng] 17:01:25,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 17:01:25,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:01:25,176 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-10_17-01-25.log] [testng] 17:01:25,176 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c10f9e3 - End of configuration. [testng] [2025-03-10 17:01:36,019] [pool-1-thread-5] Initializing /data/converted/dub01.pic: [testng] [2025-03-10 17:01:37,290] [pool-1-thread-6] Initializing /data/samples/FLDUAL.TIF: [testng] [2025-03-10 17:01:40,108] [pool-1-thread-10] Initializing /data/converted/clown.tif: [testng] [2025-03-10 17:01:41,271] [pool-1-thread-1] Initializing /data/converted/clown.ipw: [testng] [2025-03-10 17:01:42,321] [pool-1-thread-2] Initializing /data/samples/HEART.SEQ: [testng] [2025-03-10 17:01:43,518] [pool-1-thread-3] Initializing /data/converted/mitosis-test.ipw: [testng] [2025-03-10 17:01:44,670] [pool-1-thread-7] Initializing /data/converted/clown8c.tif: [testng] [2025-03-10 17:01:46,798] [pool-1-thread-12] Initializing /data/samples/TISSUE.TIF: [testng] [2025-03-10 17:01:49,503] [pool-1-thread-4] Initializing /data/converted/mitosis-test.seq: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 47 seconds Finished: SUCCESS