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Started by upstream project "BIOFORMATS-test-repo" build number 372 originally caused by: Started by upstream project "Trigger" build number 397 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins13430735705989765010.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_59141_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:26:53,586 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:26:53,588 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 00:26:53,588 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:26:53,588 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:26:53,589 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:26:53,589 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:26:53,590 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:26:53,590 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:26:53,590 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:26:53,591 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:26:53,591 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:26:53,591 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:26:53,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:26:53,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:26:53,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:26:53,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:26:53,800 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:26:53,800 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:26:53,800 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:26:53,800 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:26:53,800 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 00:26:53,801 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 00:26:53,801 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 211 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-11 00:26:53,810] [main] java.version = 11.0.16 [testng] 00:26:53,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:26:53,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:53,858 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-11_00-26-53.log] [testng] 00:26:53,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-11 00:26:53,862] [main] testng.directory = /data [testng] [2025-03-11 00:26:53,862] [main] testng.configDirectory = /config [testng] [2025-03-11 00:26:53,873] [main] testng.multiplier = 1.0 [testng] [2025-03-11 00:26:53,874] [main] testng.in-memory = false [testng] [2025-03-11 00:26:53,874] [main] testng.allow-missing = false [testng] [2025-03-11 00:26:53,874] [main] user.language = en [testng] [2025-03-11 00:26:53,875] [main] user.country = ${user.country} [testng] [2025-03-11 00:26:53,875] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-11 00:27:27,157] [main] ---------------------------------------- [testng] [2025-03-11 00:27:27,157] [main] Total files: 21 [testng] [2025-03-11 00:27:27,157] [main] Scan time: 33.282 s (1584 ms/file) [testng] [2025-03-11 00:27:27,157] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-11 00:28:21,116] [pool-1-thread-1] Initializing /data/stefan/001_q12.txt: [testng] 00:28:21,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:28:21,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:21,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-11_00-28-21.log] [testng] 00:28:21,120 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a6aec11 - End of configuration. [testng] [2025-03-11 00:28:24,891] [pool-1-thread-12] Initializing /data/stefan/001_q18.txt: [testng] 00:28:24,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:28:24,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:24,894 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-11_00-28-24.log] [testng] 00:28:24,894 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e0bc343 - End of configuration. [testng] [2025-03-11 00:28:26,822] [pool-1-thread-11] Initializing /data/stefan/001_q07.txt: [testng] 00:28:26,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:28:26,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:26,823 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-11_00-28-26.log] [testng] 00:28:26,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1096a957 - End of configuration. [testng] [2025-03-11 00:28:30,046] [pool-1-thread-10] Initializing /data/stefan/001_q13.txt: [testng] 00:28:30,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:28:30,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:30,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-11_00-28-30.log] [testng] 00:28:30,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38cdb6b0 - End of configuration. [testng] [2025-03-11 00:28:31,446] [pool-1-thread-9] Initializing /data/stefan/001_q08.txt: [testng] 00:28:31,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:28:31,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:31,447 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-11_00-28-31.log] [testng] 00:28:31,447 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b0c5c39 - End of configuration. [testng] [2025-03-11 00:28:34,258] [pool-1-thread-8] Initializing /data/stefan/001_q01.txt: [testng] 00:28:34,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:28:34,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:34,259 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-11_00-28-34.log] [testng] 00:28:34,259 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3346bbd4 - End of configuration. [testng] [2025-03-11 00:28:36,366] [pool-1-thread-7] Initializing /data/stefan/001_q09.txt: [testng] 00:28:36,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:28:36,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:36,367 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-11_00-28-36.log] [testng] 00:28:36,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53902135 - End of configuration. [testng] [2025-03-11 00:28:40,230] [pool-1-thread-6] Initializing /data/stefan/001_q03.txt: [testng] 00:28:40,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:28:40,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:40,231 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-11_00-28-40.log] [testng] 00:28:40,232 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61dcdbd - End of configuration. [testng] [2025-03-11 00:28:41,809] [pool-1-thread-5] Initializing /data/stefan/001_q02.txt: [testng] 00:28:41,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:28:41,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:41,810 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-11_00-28-41.log] [testng] 00:28:41,810 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ebaa290 - End of configuration. [testng] [2025-03-11 00:28:43,468] [pool-1-thread-4] Initializing /data/stefan/001_q11.txt: [testng] 00:28:43,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:28:43,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:43,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-11_00-28-43.log] [testng] 00:28:43,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@115d13e - End of configuration. [testng] [2025-03-11 00:28:47,368] [pool-1-thread-3] Initializing /data/stefan/001_q15.txt: [testng] 00:28:47,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:28:47,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:47,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-11_00-28-47.log] [testng] 00:28:47,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e881f01 - End of configuration. [testng] [2025-03-11 00:28:49,137] [pool-1-thread-2] Initializing /data/stefan/001_q17.txt: [testng] 00:28:49,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:28:49,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:49,138 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-11_00-28-49.log] [testng] 00:28:49,139 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fc541a0 - End of configuration. [testng] [2025-03-11 00:29:18,315] [pool-1-thread-6] Initializing /data/stefan/001_q14.txt: [testng] [2025-03-11 00:29:20,891] [pool-1-thread-8] Initializing /data/stefan/001_q04.txt: [testng] [2025-03-11 00:29:23,388] [pool-1-thread-5] Initializing /data/stefan/001_q16.txt: [testng] [2025-03-11 00:29:25,356] [pool-1-thread-12] Initializing /data/stefan/001_q06.txt: [testng] [2025-03-11 00:29:27,306] [pool-1-thread-2] Initializing /data/stefan/001_q10.txt: [testng] [2025-03-11 00:29:30,291] [pool-1-thread-3] Initializing /data/stefan/001_q05.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 3 minutes 5 seconds Finished: SUCCESS