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Started by upstream project "BIOFORMATS-test-repo" build number 375 originally caused by: Started by upstream project "Trigger" build number 398 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins7043374498091002840.sh + '[' minc = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_59370_merge_ci -v /uod/idr/repos/curated/minc:/data -v /uod/idr-scratch/merge-ci/curated/minc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:54:57,742 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:54:57,743 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 01:54:57,743 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:54:57,744 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:54:57,744 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:54:57,745 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:54:57,745 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:54:57,745 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:54:57,746 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:54:57,746 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:54:57,746 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:54:57,747 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:54:57,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:54:57,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:54:57,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:54:57,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:54:57,936 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:54:57,936 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:54:57,937 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:54:57,937 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:54:57,937 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 01:54:57,938 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 01:54:57,938 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 192 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-12 01:54:57,946] [main] java.version = 17.0.2 [testng] 01:54:57,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:54:57,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:57,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-12_01-54-57.log] [testng] 01:54:57,990 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-12 01:54:57,992] [main] testng.directory = /data [testng] [2025-03-12 01:54:57,992] [main] testng.configDirectory = /config [testng] [2025-03-12 01:54:58,001] [main] testng.multiplier = 1.0 [testng] [2025-03-12 01:54:58,002] [main] testng.in-memory = false [testng] [2025-03-12 01:54:58,002] [main] testng.allow-missing = false [testng] [2025-03-12 01:54:58,002] [main] user.language = en [testng] [2025-03-12 01:54:58,002] [main] user.country = ${user.country} [testng] [2025-03-12 01:54:58,002] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-12 01:54:59,359] [main] ---------------------------------------- [testng] [2025-03-12 01:54:59,359] [main] Total files: 15 [testng] [2025-03-12 01:54:59,359] [main] Scan time: 1.357 s (90 ms/file) [testng] [2025-03-12 01:54:59,359] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 15 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-12 01:55:16,269] [pool-1-thread-1] Initializing /data/samples/ICBM/icbm_template_zero.75mm.mnc: [testng] 01:55:16,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:55:16,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:16,271 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-12_01-55-16.log] [testng] 01:55:16,271 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7061d2e7 - End of configuration. [testng] [2025-03-12 01:55:16,953] [pool-1-thread-12] Initializing /data/samples/ICBM/icbm_template_2.00mm.mnc: [testng] 01:55:16,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:55:16,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:16,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-12_01-55-16.log] [testng] 01:55:16,954 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11773bab - End of configuration. [testng] [2025-03-12 01:55:17,576] [pool-1-thread-11] Initializing /data/qa-17215/IBSR01.mnc: [testng] 01:55:17,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:55:17,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:17,577 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-12_01-55-17.log] [testng] 01:55:17,577 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e156d11 - End of configuration. [testng] [2025-03-12 01:55:18,273] [pool-1-thread-10] Initializing /data/daren/test_32bit_float.mnc: [testng] 01:55:18,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:55:18,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:18,274 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-12_01-55-18.log] [testng] 01:55:18,275 |-INFO in ch.qos.logback.core.sift.SiftProcessor@618b5a07 - End of configuration. [testng] [2025-03-12 01:55:19,203] [pool-1-thread-9] Initializing /data/samples/ICBM/icbm_template_one.50mm.mnc: [testng] 01:55:19,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:55:19,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:19,204 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-12_01-55-19.log] [testng] 01:55:19,204 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d274ac7 - End of configuration. [testng] [2025-03-12 01:55:19,860] [pool-1-thread-8] Initializing /data/samples/ICBM/icbm_template_3.00mm.mnc: [testng] 01:55:19,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:55:19,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:19,861 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-12_01-55-19.log] [testng] 01:55:19,861 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71461211 - End of configuration. [testng] [2025-03-12 01:55:20,489] [pool-1-thread-7] Initializing /data/bigbrain/full16_400um_2009b_sym.mnc: [testng] 01:55:20,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:55:20,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:20,491 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-12_01-55-20.log] [testng] 01:55:20,491 |-INFO in ch.qos.logback.core.sift.SiftProcessor@773cac00 - End of configuration. [testng] [2025-03-12 01:55:23,343] [pool-1-thread-6] Initializing /data/samples/ICBM/icbm_template_one.00mm.mnc: [testng] 01:55:23,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:55:23,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:23,345 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-12_01-55-23.log] [testng] 01:55:23,345 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c2cbe72 - End of configuration. [testng] [2025-03-12 01:55:24,013] [pool-1-thread-5] Initializing /data/samples/ICBM/icbm_template_6.00mm.mnc: [testng] 01:55:24,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:55:24,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:24,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-12_01-55-24.log] [testng] 01:55:24,015 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19fe2ba - End of configuration. [testng] [2025-03-12 01:55:24,644] [pool-1-thread-4] Initializing /data/bigbrain/pm6479o.mnc: [testng] 01:55:24,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:55:24,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:24,645 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-12_01-55-24.log] [testng] 01:55:24,645 |-INFO in ch.qos.logback.core.sift.SiftProcessor@170eea2c - End of configuration. [testng] [2025-03-12 01:55:25,973] [pool-1-thread-3] Initializing /data/bigbrain/8-bit_full_400um_2009b_sym.mnc: [testng] 01:55:25,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:55:25,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:25,974 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-12_01-55-25.log] [testng] 01:55:25,975 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ba1cd08 - End of configuration. [testng] [2025-03-12 01:55:27,437] [pool-1-thread-2] Initializing /data/samples/ICBM/icbm_template_zero.50mm.mnc: [testng] 01:55:27,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:55:27,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:27,438 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-12_01-55-27.log] [testng] 01:55:27,438 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60d71e8f - End of configuration. BUILD SUCCESSFUL Total time: 53 seconds Finished: SUCCESS