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Started by upstream project "BIOFORMATS-test-repo" build number 375 originally caused by: Started by upstream project "Trigger" build number 398 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins4238803019783837333.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_59454_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 06:49:04,871 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 06:49:04,873 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 06:49:04,873 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:49:04,873 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:49:04,874 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:49:04,874 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:49:04,874 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:49:04,874 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:49:04,875 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:49:04,875 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:49:04,876 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:49:04,876 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:49:05,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:49:05,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:49:05,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:49:05,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:49:05,066 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:49:05,066 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:49:05,067 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:49:05,067 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:49:05,067 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 06:49:05,068 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 06:49:05,068 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 193 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-12 06:49:05,076] [main] java.version = 17.0.2 [testng] 06:49:05,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:49:05,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:49:05,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-12_06-49-05.log] [testng] 06:49:05,120 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-12 06:49:05,122] [main] testng.directory = /data [testng] [2025-03-12 06:49:05,122] [main] testng.configDirectory = /config [testng] [2025-03-12 06:49:05,131] [main] testng.multiplier = 1.0 [testng] [2025-03-12 06:49:05,132] [main] testng.in-memory = false [testng] [2025-03-12 06:49:05,132] [main] testng.allow-missing = false [testng] [2025-03-12 06:49:05,132] [main] user.language = en [testng] [2025-03-12 06:49:05,132] [main] user.country = ${user.country} [testng] [2025-03-12 06:49:05,132] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-12 06:49:40,655] [main] ---------------------------------------- [testng] [2025-03-12 06:49:40,655] [main] Total files: 31 [testng] [2025-03-12 06:49:40,655] [main] Scan time: 35.523 s (1145 ms/file) [testng] [2025-03-12 06:49:40,655] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-12 06:50:20,324] [pool-1-thread-1] Initializing /data/venu/Multichannel 3a.jpg: [testng] 06:50:20,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:50:20,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:50:20,325 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-12_06-50-20.log] [testng] 06:50:20,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@427ba813 - End of configuration. [testng] [2025-03-12 06:50:20,644] [pool-1-thread-12] Initializing /data/venu/Multichannel 3.jp2: [testng] 06:50:20,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:50:20,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:50:20,645 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-12_06-50-20.log] [testng] 06:50:20,646 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ea98fc8 - End of configuration. [testng] [2025-03-12 06:50:21,861] [pool-1-thread-11] Initializing /data/david/000000_000001.jpx: [testng] 06:50:21,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:50:21,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:50:21,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-12_06-50-21.log] [testng] 06:50:21,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2157873c - End of configuration. [testng] [2025-03-12 06:50:23,153] [pool-1-thread-10] Initializing /data/vikram/Captured 3.jp2: [testng] 06:50:23,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:50:23,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:50:23,154 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-12_06-50-23.log] [testng] 06:50:23,155 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c559cfd - End of configuration. [testng] [2025-03-12 06:50:24,361] [pool-1-thread-9] Initializing /data/david/C1R1_FOS.jp2: [testng] 06:50:24,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:50:24,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:50:24,361 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-12_06-50-24.log] [testng] 06:50:24,362 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4573c73 - End of configuration. [testng] [2025-03-12 06:50:25,468] [pool-1-thread-8] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] 06:50:25,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:50:25,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:50:25,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-12_06-50-25.log] [testng] 06:50:25,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@399daa5c - End of configuration. [testng] [2025-03-12 06:50:26,626] [pool-1-thread-7] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] 06:50:26,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:50:26,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:50:26,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-12_06-50-26.log] [testng] 06:50:26,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fddd123 - End of configuration. [testng] [2025-03-12 06:50:29,173] [pool-1-thread-6] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] 06:50:29,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:50:29,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:50:29,173 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-12_06-50-29.log] [testng] 06:50:29,174 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4971792b - End of configuration. [testng] [2025-03-12 06:50:30,725] [pool-1-thread-5] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] 06:50:30,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:50:30,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:50:30,726 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-12_06-50-30.log] [testng] 06:50:30,727 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5855541 - End of configuration. [testng] [2025-03-12 06:50:31,776] [pool-1-thread-4] Initializing /data/vikram/Captured 2.jp2: [testng] 06:50:31,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:50:31,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:50:31,776 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-12_06-50-31.log] [testng] 06:50:31,777 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ffb5f72 - End of configuration. [testng] [2025-03-12 06:50:32,953] [pool-1-thread-3] Initializing /data/david/cy5-tph.jp2: [testng] 06:50:32,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:50:32,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:50:32,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-12_06-50-32.log] [testng] 06:50:32,954 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b0b5200 - End of configuration. [testng] [2025-03-12 06:50:34,042] [pool-1-thread-2] Initializing /data/vikram/Captured 1.jp2: [testng] 06:50:34,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:50:34,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:50:34,043 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-12_06-50-34.log] [testng] 06:50:34,043 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52b12329 - End of configuration. [testng] [2025-03-12 06:50:41,876] [pool-1-thread-1] Initializing /data/vikram/Captured 5.jp2: [testng] [2025-03-12 06:50:44,437] [pool-1-thread-2] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2025-03-12 06:50:46,182] [pool-1-thread-10] Initializing /data/misc/clown-rgb.jbig: [testng] [2025-03-12 06:50:49,148] [pool-1-thread-4] Initializing /data/big-images/2kx2k.jpf: [testng] [2025-03-12 06:50:52,436] [pool-1-thread-7] Initializing /data/david/multichannel-2d test.jp2: [testng] [2025-03-12 06:50:55,660] [pool-1-thread-11] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] [2025-03-12 06:50:59,229] [pool-1-thread-1] Initializing /data/frans/flower.jp2: [testng] [2025-03-12 06:51:02,517] [pool-1-thread-12] Initializing /data/big-images/8kx8k.jpf: [testng] [2025-03-12 06:51:03,472] [pool-1-thread-8] Initializing /data/aryeh/flour 12.jp2: [testng] [2025-03-12 06:51:06,147] [pool-1-thread-10] Initializing /data/misc/clown-rgb.jpc: [testng] [2025-03-12 06:51:12,115] [pool-1-thread-2] Initializing /data/misc/clown-rgb.jp2: [testng] [2025-03-12 06:51:13,439] [pool-1-thread-4] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [2025-03-12 06:51:15,038] [pool-1-thread-9] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] [2025-03-12 06:51:15,984] [pool-1-thread-11] Initializing /data/kraig/head.jp2: [testng] [2025-03-12 06:51:16,697] [pool-1-thread-8] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] [2025-03-12 06:51:19,129] [pool-1-thread-10] Initializing /data/vikram/Captured 4.jp2: [testng] [2025-03-12 06:51:21,312] [pool-1-thread-2] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] [2025-03-12 06:51:24,082] [pool-1-thread-11] Initializing /data/big-images/4kx4k.jpf: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 59 seconds Finished: SUCCESS