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Started by upstream project "BIOFORMATS-test-repo" build number 42 originally caused by: Started by upstream project "Trigger" build number 49 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins5347973559146287833.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_5961_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 06:43:27,259 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 06:43:27,262 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 06:43:27,262 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:43:27,263 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:43:27,264 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:43:27,264 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:43:27,265 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:43:27,265 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:43:27,265 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:43:27,266 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:43:27,266 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:43:27,267 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:43:27,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:43:27,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:43:27,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:43:27,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:43:27,544 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:43:27,545 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:43:27,545 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:43:27,546 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:43:27,546 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 06:43:27,547 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 06:43:27,547 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 282 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-23 06:43:27,564] [main] java.version = 11.0.16 [testng] 06:43:27,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:43:27,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:43:27,654 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-23_06-43-27.log] [testng] 06:43:27,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-04-23 06:43:27,659] [main] testng.directory = /data [testng] [2024-04-23 06:43:27,659] [main] testng.configDirectory = /config [testng] [2024-04-23 06:43:27,678] [main] testng.multiplier = 1.0 [testng] [2024-04-23 06:43:27,680] [main] testng.in-memory = false [testng] [2024-04-23 06:43:27,681] [main] testng.allow-missing = false [testng] [2024-04-23 06:43:27,682] [main] user.language = en [testng] [2024-04-23 06:43:27,683] [main] user.country = ${user.country} [testng] [2024-04-23 06:43:27,685] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-23 06:50:42,303] [main] ---------------------------------------- [testng] [2024-04-23 06:50:42,303] [main] Total files: 7329 [testng] [2024-04-23 06:50:42,304] [main] Scan time: 434.616 s (59 ms/file) [testng] [2024-04-23 06:50:42,304] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-23 06:53:54,161] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] 06:53:54,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:53:54,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:53:54,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-23_06-53-54.log] [testng] 06:53:54,165 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7524b00f - End of configuration. [testng] [2024-04-23 06:53:54,258] [pool-1-thread-1] Used files list does not include base file [testng] [2024-04-23 06:53:54,265] [pool-1-thread-12] Initializing /data/josh/2101to600e.stk: [testng] 06:53:54,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:53:54,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:53:54,267 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-23_06-53-54.log] [testng] 06:53:54,267 |-INFO in ch.qos.logback.core.sift.SiftProcessor@385795b7 - End of configuration. [testng] [2024-04-23 06:53:54,869] [pool-1-thread-11] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] 06:53:54,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:53:54,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:53:54,870 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-23_06-53-54.log] [testng] 06:53:54,870 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f2d87d6 - End of configuration. [testng] [2024-04-23 06:53:54,954] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] 06:53:54,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:53:54,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:53:54,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-23_06-53-54.log] [testng] 06:53:54,955 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e9cee5d - End of configuration. [testng] [2024-04-23 06:53:55,028] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] 06:53:55,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:53:55,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:53:55,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-23_06-53-55.log] [testng] 06:53:55,029 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e14ddce - End of configuration. [testng] [2024-04-23 06:53:55,075] [pool-1-thread-9] Used files list does not include base file [testng] [2024-04-23 06:53:55,077] [pool-1-thread-8] Initializing /data/dave/Z Series.stk: [testng] 06:53:55,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:53:55,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:53:55,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-23_06-53-55.log] [testng] 06:53:55,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@86c0f51 - End of configuration. [testng] [2024-04-23 06:53:55,115] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] 06:53:55,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:53:55,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:53:55,116 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-23_06-53-55.log] [testng] 06:53:55,116 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cfa9519 - End of configuration. [testng] [2024-04-23 06:53:55,140] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] 06:53:55,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:53:55,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:53:55,141 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-23_06-53-55.log] [testng] 06:53:55,141 |-INFO in ch.qos.logback.core.sift.SiftProcessor@701b6732 - End of configuration. [testng] [2024-04-23 06:53:55,190] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] 06:53:55,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:53:55,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:53:55,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-23_06-53-55.log] [testng] 06:53:55,191 |-INFO in ch.qos.logback.core.sift.SiftProcessor@315f2946 - End of configuration. [testng] [2024-04-23 06:53:55,259] [pool-1-thread-5] Used files list does not include base file [testng] [2024-04-23 06:53:55,261] [pool-1-thread-4] Initializing /data/qa-31304/Well _C6_1.tif: [testng] 06:53:55,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:53:55,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:53:55,262 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-23_06-53-55.log] [testng] 06:53:55,262 |-INFO in ch.qos.logback.core.sift.SiftProcessor@214d7d5f - End of configuration. [testng] [2024-04-23 06:53:55,346] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] 06:53:55,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:53:55,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:53:55,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-23_06-53-55.log] [testng] 06:53:55,347 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45158e57 - End of configuration. [testng] [2024-04-23 06:53:55,429] [pool-1-thread-2] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] 06:53:55,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:53:55,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:53:55,430 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-23_06-53-55.log] [testng] 06:53:55,430 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59ac3999 - End of configuration. [testng] [2024-04-23 06:53:56,868] [pool-1-thread-7] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-04-23 06:53:57,210] [pool-1-thread-8] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-04-23 06:53:57,518] [pool-1-thread-3] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-04-23 06:53:57,551] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-04-23 06:53:57,693] [pool-1-thread-10] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-04-23 06:53:57,855] [pool-1-thread-7] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-04-23 06:53:58,000] [pool-1-thread-4] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-04-23 06:53:58,102] [pool-1-thread-6] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-04-23 06:53:58,780] [pool-1-thread-3] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-04-23 06:53:59,352] [pool-1-thread-11] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-04-23 06:53:59,613] [pool-1-thread-6] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-04-23 06:53:59,693] [pool-1-thread-4] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-04-23 06:53:59,758] [pool-1-thread-1] Initializing /data/samples/zseries.stk: [testng] [2024-04-23 06:53:59,829] [pool-1-thread-9] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-04-23 06:54:00,016] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-04-23 06:54:00,042] [pool-1-thread-8] Used files list does not include base file [testng] [2024-04-23 06:54:00,045] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-04-23 06:54:00,422] [pool-1-thread-10] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-04-23 06:54:00,508] [pool-1-thread-7] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-04-23 06:54:01,717] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-04-23 06:54:01,794] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-04-23 06:54:02,013] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-04-23 06:54:02,105] [pool-1-thread-6] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-04-23 06:54:02,159] [pool-1-thread-3] Initializing /data/steve/Experiment2.stk: [testng] [2024-04-23 06:54:02,312] [pool-1-thread-1] Initializing /data/josh/2101to600f.stk: [testng] [2024-04-23 06:54:04,779] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-04-23 06:54:04,847] [pool-1-thread-9] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-04-23 06:54:05,065] [pool-1-thread-6] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-04-23 06:54:05,420] [pool-1-thread-5] Initializing /data/david/tl4.tif: [testng] [2024-04-23 06:54:07,154] [pool-1-thread-3] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-04-23 06:54:07,349] [pool-1-thread-12] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-04-23 06:54:07,526] [pool-1-thread-11] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-04-23 06:54:07,612] [pool-1-thread-4] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-04-23 06:54:08,316] [pool-1-thread-8] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-04-23 06:54:08,514] [pool-1-thread-10] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-04-23 06:54:08,803] [pool-1-thread-3] Initializing /data/samples/zserEight.stk: [testng] [2024-04-23 06:54:09,081] [pool-1-thread-10] Initializing /data/aaron/metamorph.stk: [testng] [2024-04-23 06:54:09,174] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-23 06:54:09,250] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-04-23 06:54:09,364] [pool-1-thread-3] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-04-23 06:54:12,596] [pool-1-thread-8] Initializing /data/alex/Selected FITC.stk: [testng] [2024-04-23 06:54:12,780] [pool-1-thread-10] Initializing /data/samples/zser24.stk: [testng] [2024-04-23 06:54:12,986] [pool-1-thread-11] Initializing 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Initializing /data/samples/diatoms3d.stk: [testng] [2024-04-23 06:54:18,113] [pool-1-thread-7] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-04-23 06:54:18,494] [pool-1-thread-12] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-04-23 06:54:18,526] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-23 06:54:18,600] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-23 06:54:18,702] [pool-1-thread-5] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-04-23 06:54:18,825] [pool-1-thread-10] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-04-23 06:54:19,764] [pool-1-thread-12] Initializing /data/samples/10xcalib.tif: [testng] [2024-04-23 06:54:20,088] [pool-1-thread-5] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-04-23 06:54:20,367] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-04-23 06:54:20,388] [pool-1-thread-12] Used files list does not include base file [testng] [2024-04-23 06:54:20,421] [pool-1-thread-10] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-04-23 06:54:20,909] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-23 06:54:21,029] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-04-23 06:54:21,279] [pool-1-thread-6] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-04-23 06:54:21,765] [pool-1-thread-10] Initializing /data/josh/2101to400astk.stk: [testng] [2024-04-23 06:54:23,716] [pool-1-thread-5] Initializing /data/qa-16887/m-01.tif: [testng] [2024-04-23 06:54:24,716] [pool-1-thread-9] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-04-23 06:54:24,784] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-04-23 06:54:24,805] [pool-1-thread-6] Used files list does not include base file [testng] [2024-04-23 06:54:25,026] [pool-1-thread-12] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-04-23 06:54:25,185] [pool-1-thread-8] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-04-23 06:54:25,791] [pool-1-thread-6] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-04-23 06:54:25,850] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-04-23 06:54:25,923] [pool-1-thread-1] Used files list does not include base file [testng] [2024-04-23 06:54:26,003] [pool-1-thread-8] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-04-23 06:54:26,690] [pool-1-thread-9] Initializing /data/samples/10xcalib.stk: [testng] [2024-04-23 06:54:27,047] [pool-1-thread-6] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-04-23 06:54:27,347] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-23 06:54:27,534] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-04-23 06:54:28,291] [pool-1-thread-5] Initializing /data/josh/2101to600b.stk: [testng] [2024-04-23 06:54:29,387] [pool-1-thread-2] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-04-23 06:54:29,734] [pool-1-thread-6] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-04-23 06:54:29,811] [pool-1-thread-8] Initializing /data/cumol-test-series/23.001: [testng] [2024-04-23 06:54:29,969] [pool-1-thread-11] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-04-23 06:54:30,285] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-04-23 06:54:30,329] [pool-1-thread-1] Used files list does not include base file [testng] [2024-04-23 06:54:30,411] [pool-1-thread-9] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-04-23 06:54:30,674] [pool-1-thread-6] Initializing 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[pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-04-23 06:54:46,199] [pool-1-thread-9] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-04-23 06:54:46,449] [pool-1-thread-10] Initializing /data/steve/Experiment2.tif: [testng] [2024-04-23 06:54:46,793] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-04-23 06:54:47,072] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-04-23 06:54:47,256] [pool-1-thread-12] Initializing /data/jerome/deconv.STK: [testng] [2024-04-23 06:54:47,519] [pool-1-thread-9] Initializing /data/qa-16915/m-04.tif: [testng] [2024-04-23 06:54:48,108] [pool-1-thread-10] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-04-23 06:54:48,173] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full 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[pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-23 06:54:51,366] [pool-1-thread-2] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-04-23 06:54:52,360] [pool-1-thread-11] Initializing /data/thomas/test.tif: [testng] [2024-04-23 06:54:52,445] [pool-1-thread-10] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-04-23 06:54:52,515] [pool-1-thread-1] Initializing /data/qa-16915/m-02.tif: [testng] [2024-04-23 06:54:53,119] [pool-1-thread-5] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-04-23 06:54:53,472] [pool-1-thread-11] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-04-23 06:54:53,588] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-04-23 06:54:53,656] [pool-1-thread-10] Used files list does not include base file [testng] [2024-04-23 06:54:53,670] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-04-23 06:54:56,068] [pool-1-thread-6] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-04-23 06:54:56,325] [pool-1-thread-12] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-04-23 06:54:57,079] [pool-1-thread-11] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-04-23 06:54:57,234] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-04-23 06:54:58,060] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-04-23 06:54:58,475] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-04-23 06:54:58,617] [pool-1-thread-10] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-04-23 06:54:59,907] [pool-1-thread-2] Initializing 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06:55:03,056] [pool-1-thread-6] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-04-23 06:55:03,113] [pool-1-thread-1] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-04-23 06:55:04,012] [pool-1-thread-6] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-04-23 06:55:04,080] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-23 06:55:04,264] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-04-23 06:55:04,700] [pool-1-thread-6] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-04-23 06:55:05,084] [pool-1-thread-1] Initializing /data/thomas/t_test2001.tif: [testng] [2024-04-23 06:55:05,378] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-04-23 06:55:05,437] [pool-1-thread-2] Used files list does not include base file [testng] [2024-04-23 06:55:05,438] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-04-23 06:55:05,459] [pool-1-thread-12] Used files list does not include base file [testng] [2024-04-23 06:55:05,636] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-04-23 06:55:05,857] [pool-1-thread-1] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-04-23 06:55:06,106] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-04-23 06:55:06,618] [pool-1-thread-6] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-04-23 06:55:07,030] [pool-1-thread-4] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-04-23 06:55:07,285] [pool-1-thread-12] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-04-23 06:55:14,388] [pool-1-thread-9] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-04-23 06:55:14,620] [pool-1-thread-6] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-04-23 06:55:15,519] [pool-1-thread-2] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-04-23 06:55:15,711] [pool-1-thread-11] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-04-23 06:55:16,137] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-04-23 06:55:16,205] [pool-1-thread-4] Used files list does not include base file [testng] [2024-04-23 06:55:16,340] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-04-23 06:55:17,207] [pool-1-thread-9] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-04-23 06:55:17,419] [pool-1-thread-2] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-04-23 06:55:17,965] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-04-23 06:55:18,912] [pool-1-thread-9] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-04-23 06:55:19,907] [pool-1-thread-6] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-04-23 06:55:20,104] [pool-1-thread-2] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-04-23 06:55:20,303] [pool-1-thread-4] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-04-23 06:55:20,918] [pool-1-thread-5] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-04-23 06:55:21,276] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-04-23 06:55:21,544] [pool-1-thread-5] Initializing /data/qa-16915/m-01.tif: [testng] [2024-04-23 06:55:22,910] [pool-1-thread-2] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-04-23 06:55:23,274] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-04-23 06:55:23,342] [pool-1-thread-6] Used files list does not include base file [testng] [2024-04-23 06:55:23,845] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-04-23 06:55:23,916] [pool-1-thread-2] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-04-23 06:55:24,362] [pool-1-thread-4] Initializing /data/jae/RGB_s34.tif: [testng] [2024-04-23 06:55:24,994] [pool-1-thread-7] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-04-23 06:55:25,560] [pool-1-thread-5] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-04-23 06:55:26,368] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-04-23 06:55:26,434] [pool-1-thread-7] Used files list does not include base file [testng] [2024-04-23 06:55:26,624] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-04-23 06:55:26,769] [pool-1-thread-9] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-04-23 06:55:26,842] [pool-1-thread-4] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-04-23 06:55:27,171] [pool-1-thread-6] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-04-23 06:55:27,460] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-04-23 06:55:27,969] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-23 06:55:28,190] [pool-1-thread-2] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-04-23 06:55:28,460] [pool-1-thread-1] Initializing /data/ascb/mt aim.tif: [testng] [2024-04-23 06:55:29,111] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-04-23 06:55:29,627] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-04-23 06:55:29,837] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-04-23 06:55:30,142] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-23 06:55:30,393] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-04-23 06:55:30,700] [pool-1-thread-9] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-04-23 06:55:32,017] [pool-1-thread-8] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-04-23 06:55:32,255] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-04-23 06:55:32,342] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-04-23 06:55:32,613] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-04-23 06:55:32,661] [pool-1-thread-4] Used files list does not include base file time="2024-04-23T06:00:26Z" level=error msg="error waiting for container: unexpected EOF" Build step 'Execute shell' marked build as failure Finished: FAILURE