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Started by upstream project "BIOFORMATS-test-repo" build number 377 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins8266931252794175961.sh + '[' visitech = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_59651_merge_ci -v /uod/idr/repos/curated/visitech:/data -v /uod/idr-scratch/merge-ci/curated/visitech:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 11:30:10,830 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 11:30:10,831 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service. [testng] 11:30:10,832 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:30:10,832 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:30:10,833 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:30:10,833 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:30:10,833 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:30:10,833 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:30:10,834 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:30:10,834 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:30:10,835 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:30:10,835 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:30:10,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:30:10,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:30:11,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:30:11,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:30:11,012 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:30:11,012 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:30:11,013 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:30:11,013 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:30:11,013 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@47d9a273 - End of configuration. [testng] 11:30:11,014 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4659191b - Registering current configuration as safe fallback point [testng] 11:30:11,014 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 180 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-13 11:30:11,022] [main] java.version = 21 [testng] 11:30:11,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:30:11,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:30:11,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-13_11-30-11.log] [testng] 11:30:11,066 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration. [testng] [2025-03-13 11:30:11,067] [main] testng.directory = /data [testng] [2025-03-13 11:30:11,067] [main] testng.configDirectory = /config [testng] [2025-03-13 11:30:11,076] [main] testng.multiplier = 1.0 [testng] [2025-03-13 11:30:11,076] [main] testng.in-memory = false [testng] [2025-03-13 11:30:11,076] [main] testng.allow-missing = false [testng] [2025-03-13 11:30:11,076] [main] user.language = en [testng] [2025-03-13 11:30:11,076] [main] user.country = ${user.country} [testng] [2025-03-13 11:30:11,076] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-13 11:30:19,219] [main] ---------------------------------------- [testng] [2025-03-13 11:30:19,219] [main] Total files: 45 [testng] [2025-03-13 11:30:19,219] [main] Scan time: 8.143 s (180 ms/file) [testng] [2025-03-13 11:30:19,220] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 15 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-13 11:30:42,953] [pool-1-thread-1] Initializing /data/kazem/noname Report.html: [testng] 11:30:42,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:30:42,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:30:42,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-13_11-30-42.log] [testng] 11:30:42,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@599d7362 - End of configuration. [testng] [2025-03-13 11:30:43,381] [pool-1-thread-12] Initializing /data/scott/2 Channel z no timelaps/2 chanel z no time Report.html: [testng] 11:30:43,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:30:43,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:30:43,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-13_11-30-43.log] [testng] 11:30:43,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30bea65c - End of configuration. [testng] [2025-03-13 11:30:43,641] [pool-1-thread-11] Initializing /data/brian/070613reA1_2 Report.html: [testng] 11:30:43,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:30:43,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:30:43,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-13_11-30-43.log] [testng] 11:30:43,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a0448ae - End of configuration. [testng] [2025-03-13 11:30:43,801] [pool-1-thread-10] Initializing /data/brian/060916-01-561.tif: [testng] 11:30:43,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:30:43,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:30:43,802 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-13_11-30-43.log] [testng] 11:30:43,802 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6641b803 - End of configuration. [testng] [2025-03-13 11:30:45,530] [pool-1-thread-9] Initializing /data/scott/2 Channel Z timelaps repeat/2 channel_Z_timelaps 2 Report.html: [testng] 11:30:45,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:30:45,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:30:45,531 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-13_11-30-45.log] [testng] 11:30:45,531 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4301436a - End of configuration. [testng] [2025-03-13 11:30:46,204] [pool-1-thread-8] Initializing /data/oliver/20x/488 Report.html: [testng] 11:30:46,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:30:46,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:30:46,205 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-13_11-30-46.log] [testng] 11:30:46,206 |-INFO in ch.qos.logback.core.sift.SiftProcessor@609bbb33 - End of configuration. [testng] [2025-03-13 11:30:47,243] [pool-1-thread-7] Initializing /data/brian/060916-01 Report.html: [testng] 11:30:47,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:30:47,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:30:47,244 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-13_11-30-47.log] [testng] 11:30:47,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1db2106a - End of configuration. [testng] [2025-03-13 11:30:47,970] [pool-1-thread-6] Initializing /data/scott/2 channel_Z_timelaps/525.tif: [testng] 11:30:47,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:30:47,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:30:47,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-13_11-30-47.log] [testng] 11:30:47,971 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d791708 - End of configuration. [testng] [2025-03-13 11:30:50,141] [pool-1-thread-5] Initializing /data/brian/060916-01-488.tif: [testng] 11:30:50,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:30:50,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:30:50,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-13_11-30-50.log] [testng] 11:30:50,143 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29712fc6 - End of configuration. [testng] [2025-03-13 11:30:52,005] [pool-1-thread-4] Initializing /data/scott/2 Channel z timelaps original/2 channel_Z_timelaps Report.html: [testng] 11:30:52,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:30:52,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:30:52,006 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-13_11-30-52.log] [testng] 11:30:52,006 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cd74fe7 - End of configuration. [testng] [2025-03-13 11:30:52,587] [pool-1-thread-3] Initializing /data/scott/2 channel_Z_timelaps/2 channel_Z_timelaps Report.html: [testng] 11:30:52,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:30:52,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:30:52,587 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-13_11-30-52.log] [testng] 11:30:52,588 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4315aeaf - End of configuration. [testng] [2025-03-13 11:30:53,223] [pool-1-thread-2] Initializing /data/scott/2 channel z 6 xy stage positions/2 chanel z 3x2 GRID Report.html: [testng] 11:30:53,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:30:53,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:30:53,224 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-13_11-30-53.log] [testng] 11:30:53,225 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f904441 - End of configuration. [testng] [2025-03-13 11:31:19,432] [pool-1-thread-11] Initializing /data/scott/2 channel_Z_timelaps/597.tif: [testng] [2025-03-13 11:31:24,272] [pool-1-thread-6] Initializing /data/brian/ScreenShot.jpg: [testng] [2025-03-13 11:31:24,714] [pool-1-thread-10] Initializing /data/oliver/20x/491 Report.html: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 795, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 57 seconds Finished: SUCCESS