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Started by upstream project "BIOFORMATS-test-repo" build number 378 originally caused by: Started by upstream project "Trigger" build number 400 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins4127503571999937283.sh + '[' lim = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_59747_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:30:34,480 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:30:34,482 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 00:30:34,482 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:30:34,483 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:30:34,483 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:30:34,483 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:30:34,483 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:30:34,483 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:30:34,484 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:30:34,484 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:30:34,484 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:30:34,484 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:30:34,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:30:34,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:30:34,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:30:34,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:30:34,746 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:30:34,746 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:30:34,746 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:30:34,747 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:30:34,747 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 00:30:34,748 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 00:30:34,748 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 264 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-14 00:30:34,763] [main] java.version = 1.8.0_342 [testng] 00:30:34,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:30:34,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:34,816 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-14_00-30-34.log] [testng] 00:30:34,818 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-14 00:30:34,820] [main] testng.directory = /data [testng] [2025-03-14 00:30:34,820] [main] testng.configDirectory = /config [testng] [2025-03-14 00:30:34,832] [main] testng.multiplier = 1.0 [testng] [2025-03-14 00:30:34,833] [main] testng.in-memory = false [testng] [2025-03-14 00:30:34,833] [main] testng.allow-missing = false [testng] [2025-03-14 00:30:34,833] [main] user.language = en [testng] [2025-03-14 00:30:34,833] [main] user.country = ${user.country} [testng] [2025-03-14 00:30:34,833] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-14 00:30:35,358] [main] ---------------------------------------- [testng] [2025-03-14 00:30:35,358] [main] Total files: 21 [testng] [2025-03-14 00:30:35,358] [main] Scan time: 0.525 s (25 ms/file) [testng] [2025-03-14 00:30:35,358] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-14 00:30:54,405] [pool-1-thread-1] Initializing /data/venu/Kontrolle0015.lim: [testng] 00:30:54,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:30:54,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:54,406 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-14_00-30-54.log] [testng] 00:30:54,407 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a06ab38 - End of configuration. [testng] [2025-03-14 00:30:55,042] [pool-1-thread-12] Initializing /data/venu/Kontrolle0020.lim: [testng] 00:30:55,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:30:55,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:55,043 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-14_00-30-55.log] [testng] 00:30:55,044 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e591130 - End of configuration. [testng] [2025-03-14 00:30:55,584] [pool-1-thread-11] Initializing /data/venu/Kontrolle0019.lim: [testng] 00:30:55,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:30:55,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:55,585 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-14_00-30-55.log] [testng] 00:30:55,586 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f5303d - End of configuration. [testng] [2025-03-14 00:30:56,208] [pool-1-thread-10] Initializing /data/venu/Kontrolle0017.lim: [testng] 00:30:56,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:30:56,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:56,209 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-14_00-30-56.log] [testng] 00:30:56,209 |-INFO in ch.qos.logback.core.sift.SiftProcessor@560badc - End of configuration. [testng] [2025-03-14 00:30:56,868] [pool-1-thread-9] Initializing /data/venu/Kontrolle0016.lim: [testng] 00:30:56,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:30:56,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:56,869 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-14_00-30-56.log] [testng] 00:30:56,869 |-INFO in ch.qos.logback.core.sift.SiftProcessor@353f44fd - End of configuration. [testng] [2025-03-14 00:30:57,488] [pool-1-thread-8] Initializing /data/venu/Kontrolle0008.lim: [testng] 00:30:57,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:30:57,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:57,489 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-14_00-30-57.log] [testng] 00:30:57,490 |-INFO in ch.qos.logback.core.sift.SiftProcessor@641cfe50 - End of configuration. [testng] [2025-03-14 00:30:58,031] [pool-1-thread-7] Initializing /data/venu/Kontrolle0001.lim: [testng] 00:30:58,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:30:58,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:58,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-14_00-30-58.log] [testng] 00:30:58,033 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a473ed6 - End of configuration. [testng] [2025-03-14 00:30:58,524] [pool-1-thread-6] Initializing /data/venu/Kontrolle0003.lim: [testng] 00:30:58,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:30:58,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:58,525 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-14_00-30-58.log] [testng] 00:30:58,526 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46dd3e2e - End of configuration. [testng] [2025-03-14 00:30:59,064] [pool-1-thread-5] Initializing /data/venu/Kontrolle0012.lim: [testng] 00:30:59,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:30:59,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:59,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-14_00-30-59.log] [testng] 00:30:59,066 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55a3deb0 - End of configuration. [testng] [2025-03-14 00:30:59,613] [pool-1-thread-4] Initializing /data/venu/Kontrolle0009.lim: [testng] 00:30:59,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:30:59,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:59,614 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-14_00-30-59.log] [testng] 00:30:59,614 |-INFO in ch.qos.logback.core.sift.SiftProcessor@178b8206 - End of configuration. [testng] [2025-03-14 00:31:00,783] [pool-1-thread-3] Initializing /data/venu/Kontrolle0013.lim: [testng] 00:31:00,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:31:00,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:00,784 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-14_00-31-00.log] [testng] 00:31:00,784 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d8294b9 - End of configuration. [testng] [2025-03-14 00:31:01,294] [pool-1-thread-2] Initializing /data/venu/Kontrolle0005.lim: [testng] 00:31:01,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:31:01,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:01,295 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-14_00-31-01.log] [testng] 00:31:01,295 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d81c61c - End of configuration. [testng] [2025-03-14 00:31:08,558] [pool-1-thread-2] Initializing /data/venu/Kontrolle0018.lim: [testng] [2025-03-14 00:31:09,346] [pool-1-thread-8] Initializing /data/venu/Kontrolle0002.lim: [testng] [2025-03-14 00:31:09,851] [pool-1-thread-10] Initializing /data/venu/Kontrolle0010.lim: [testng] [2025-03-14 00:31:10,400] [pool-1-thread-12] Initializing /data/venu/Kontrolle0004.lim: [testng] [2025-03-14 00:31:10,913] [pool-1-thread-6] Initializing /data/venu/Kontrolle0014.lim: [testng] [2025-03-14 00:31:11,380] [pool-1-thread-4] Initializing /data/venu/Kontrolle0011.lim: [testng] [2025-03-14 00:31:11,939] [pool-1-thread-7] Initializing /data/venu/Kontrolle0007.lim: [testng] [2025-03-14 00:31:12,359] [pool-1-thread-3] Initializing /data/venu/Kontrolle0021.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 46 seconds Finished: SUCCESS