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Started by upstream project "BIOFORMATS-test-repo" build number 378 originally caused by: Started by upstream project "Trigger" build number 400 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins14817635568540559464.sh + '[' canon = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_59776_merge_ci -v /uod/idr/repos/curated/canon:/data -v /uod/idr-scratch/merge-ci/curated/canon:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:05:46,200 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:05:46,202 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 01:05:46,202 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:05:46,203 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:05:46,203 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:05:46,203 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:05:46,204 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:05:46,204 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:05:46,204 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:05:46,204 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:05:46,204 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:05:46,205 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:05:46,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:05:46,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:05:46,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:05:46,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:05:46,465 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:05:46,466 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:05:46,466 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:05:46,466 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:05:46,466 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 01:05:46,467 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 01:05:46,467 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 263 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-14 01:05:46,477] [main] java.version = 1.8.0_342 [testng] 01:05:46,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:05:46,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:05:46,526 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-14_01-05-46.log] [testng] 01:05:46,527 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-14 01:05:46,529] [main] testng.directory = /data [testng] [2025-03-14 01:05:46,529] [main] testng.configDirectory = /config [testng] [2025-03-14 01:05:46,541] [main] testng.multiplier = 1.0 [testng] [2025-03-14 01:05:46,542] [main] testng.in-memory = false [testng] [2025-03-14 01:05:46,542] [main] testng.allow-missing = false [testng] [2025-03-14 01:05:46,542] [main] user.language = en [testng] [2025-03-14 01:05:46,542] [main] user.country = ${user.country} [testng] [2025-03-14 01:05:46,542] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-14 01:06:06,491] [main] ---------------------------------------- [testng] [2025-03-14 01:06:06,492] [main] Total files: 13 [testng] [2025-03-14 01:06:06,492] [main] Scan time: 19.949 s (1534 ms/file) [testng] [2025-03-14 01:06:06,492] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 13 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-14 01:06:29,414] [pool-1-thread-1] Initializing /data/kinor/2013_03_08_0808.CR2: [testng] 01:06:29,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:06:29,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:06:29,415 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-14_01-06-29.log] [testng] 01:06:29,416 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d37bcb0 - End of configuration. [testng] [2025-03-14 01:06:30,224] [pool-1-thread-12] Initializing /data/pete/DNG-WAV.WAV: [testng] 01:06:30,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:06:30,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:06:30,225 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-14_01-06-30.log] [testng] 01:06:30,226 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ede5b8a - End of configuration. [testng] [2025-03-14 01:06:30,992] [pool-1-thread-11] Initializing /data/pete/Raw-WAV.WAV: [testng] 01:06:30,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:06:30,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:06:30,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-14_01-06-30.log] [testng] 01:06:30,995 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78bf8892 - End of configuration. [testng] [2025-03-14 01:06:33,310] [pool-1-thread-10] Initializing /data/cls/_N5Y0001.CR2: [testng] 01:06:33,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:06:33,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:06:33,311 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-14_01-06-33.log] [testng] 01:06:33,312 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dc88614 - End of configuration. [testng] [2025-03-14 01:06:34,357] [pool-1-thread-9] Initializing /data/pete/Raw-JPG.JPG: [testng] 01:06:34,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:06:34,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:06:34,358 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-14_01-06-34.log] [testng] 01:06:34,359 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60f0d730 - End of configuration. [testng] [2025-03-14 01:06:36,526] [pool-1-thread-8] Initializing /data/pete/DNG-CR2.CR2: [testng] 01:06:36,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:06:36,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:06:36,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-14_01-06-36.log] [testng] 01:06:36,529 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6eea95ff - End of configuration. [testng] [2025-03-14 01:06:37,450] [pool-1-thread-7] Initializing /data/pete/Learning to Fly.JPG: [testng] 01:06:37,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:06:37,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:06:37,451 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-14_01-06-37.log] [testng] 01:06:37,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@622bb131 - End of configuration. [testng] [2025-03-14 01:06:38,271] [pool-1-thread-6] Initializing /data/pete/Raw-CR2.CR2: [testng] 01:06:38,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:06:38,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:06:38,272 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-14_01-06-38.log] [testng] 01:06:38,273 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fcc1e39 - End of configuration. [testng] [2025-03-14 01:06:39,811] [pool-1-thread-5] Initializing /data/pete/Raw-THM.THM: [testng] 01:06:39,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:06:39,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:06:39,812 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-14_01-06-39.log] [testng] 01:06:39,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7441f5ab - End of configuration. [testng] [2025-03-14 01:06:41,657] [pool-1-thread-4] Initializing /data/pete/DNG-THM.THM: [testng] 01:06:41,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:06:41,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:06:41,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-14_01-06-41.log] [testng] 01:06:41,659 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2788e571 - End of configuration. [testng] [2025-03-14 01:06:42,244] [pool-1-thread-3] Initializing /data/pete/DNG-CRW.CRW: [testng] 01:06:42,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:06:42,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:06:42,245 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-14_01-06-42.log] [testng] 01:06:42,245 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bdc5690 - End of configuration. [testng] [2025-03-14 01:06:43,514] [pool-1-thread-2] Initializing /data/pete/Raw-CRW.CRW: [testng] 01:06:43,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:06:43,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:06:43,515 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-14_01-06-43.log] [testng] 01:06:43,515 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ece3ec1 - End of configuration. [testng] [2025-03-14 01:06:59,095] [pool-1-thread-7] Initializing /data/pete/DNG-JPG.JPG: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 689, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 32 seconds Finished: SUCCESS